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[174763_s_at]

Description CEK043E9R_rc /REP_DB=TREMBL Accession /GB=D34273 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 86      6grp_total > 66      4grp_total > 29      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 1004
(1.4)
P 		919
(-1.3)
P 		865.4
(-3)
P 		1053.5
(3)
P 		188
B 1147.1
(3)
P 		953.2
(-0.6)
P 		824.7
(-3)
P 		1064.7
(1.5)
P 		322
C 1014.5
(3)
P 		872.8
(-0.2)
P 		745.4
(-3)
P 		995.2
(2.6)
P 		269
avr 1055.2
(3) 		915
(-0.5) 		811.8
(-3) 		1037.8
(2.6) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 813.3
(-3)
P 		919.6
(-0.9)
P 		823.9
(-2.8)
P 		893.1
(-1.5)
P 		843.5
(-2.4)
P 		1122.7
(3)
P 		309
B 707.1
(-3)
P 		829.1
(-1.3)
P 		868.1
(-0.7)
P 		885.3
(-0.5)
P 		770.7
(-2.1)
P 		1129.3
(3)
P 		422
C 850.2
(-2.2)
P 		888.2
(-1.9)
P 		901.4
(-1.7)
P 		989.6
(-1)
P 		759
(-3)
P 		1438.9
(3)
P 		680
avr 790.2
(-3) 		879
(-1.8) 		864.5
(-2) 		922.7
(-1.2) 		791.1
(-3) 		1230.3
(3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 365.6
(3)
P 		199.5
(-1.7)
P 		226.2
(-1)
P 		154.2
(-3)
P 		211
B 365.8
(3)
P 		235.4
(-1.5)
P 		191.1
(-3)
P 		226.9
(-1.8)
P 		175
C 335.8
(3)
P 		250.9
(-0)
P 		259.8
(0.3)
P 		167.8
(-3)
P 		168
avr 355.7
(3) 		228.6
(-1.4) 		225.7
(-1.5) 		183
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 149.9
(-3)
P 		327
(3)
P 		179.4
(-2)
P 		226.5
(-0.4)
P 		254.5
(0.5)
P 		273.3
(1.2)
P 		177
B 246
(-2)
P 		276
(-1.1)
P 		210.8
(-3)
P 		234.5
(-2.3)
P 		313.1
(-0.1)
P 		421.1
(3)
P 		210
C 315.1
(-0.5)
P 		271
(-1.5)
P 		229.4
(-2.4)
P 		199
(-3)
P 		245.6
(-2)
P 		481.7
(3)
P 		283
avr 237
(-2) 		291.3
(-0.3) 		206.5
(-3) 		220
(-2.6) 		271.1
(-0.9) 		392
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174763_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20974
Sequence Type Exemplar sequence
Representative Public ID CEK043E9R NCBI
Target Description CEK043E9R_rc /REP_DB=TREMBL Accession /GB=D34273 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066158(11), NM_171183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066158 NCBI Caenorhabditis elegans B0280.1a (B0280.1) mRNA, complete cds. 11/11 A 
NM_171183 NCBI Caenorhabditis elegans B0280.1b (B0280.1) mRNA, complete cds. 11/11 None
SNAP00000041615 ENSEMBL cdna:SNAP chromosome:CEL140:III:7134046:7136332:1 11/11 None
GENEFINDER00000041630 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7136198:7136307:1 10/11 None
B0280.1a ENSEMBL cdna:known chromosome:CEL140:III:7133737:7136332:1 gene:B0280.1 11/11 A 
B0280.1b ENSEMBL cdna:known chromosome:CEL140:III:7133807:7136356:1 gene:B0280.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7135809-7136344(+) 95.53 100.0
Public Domain and Genome References
Ensembl B0280.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL50321 Hypothetical protein B0280.1a [Caenorhabditis elegans] ref|NP_498559.1| B0280.1a [Caenorhabditis elegans] sp|P41992|PFTB_CAEEL Probable protein farnesyltransferase beta subunit (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) 0.0
blast CAE70140 Hypothetical protein CBG16602 [Caenorhabditis briggsae] 1.0E-177
blast AAL50322 Hypothetical protein B0280.1b [Caenorhabditis elegans] ref|NP_741214.1| B0280.1b [Caenorhabditis elegans] 1.0E-177
blast AAL50322 Hypothetical protein B0280.1b [Caenorhabditis elegans] ref|NP_741214.1| B0280.1b [Caenorhabditis elegans] 1.0E-173
blast T15296 hypothetical protein B0280.1 - Caenorhabditis elegans 1.0E-173
blast AAL50321 Hypothetical protein B0280.1a [Caenorhabditis elegans] ref|NP_498559.1| B0280.1a [Caenorhabditis elegans] sp|P41992|PFTB_CAEEL Probable protein farnesyltransferase beta subunit (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.2E-14
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.1E-13
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.0E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.4E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 6.4E-15
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 7.1E-6
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.2E-14
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.1E-13
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.0E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.4E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 6.4E-15
Sequence
Target Sequence 
>C. ELEGANS:174763_S_AT
ccttccacacggtctttggcatagctgcactttctctgtttggagacgacacattggagt
cagtggacccaattttctgcatgaccaagagatgtctcggtgataagcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCCACACGGTCTTTGGCATAGC 488 269 251 Antisense
CACACGGTCTTTGGCATAGCTGCAC 607 195 256 Antisense
CGGTCTTTGGCATAGCTGCACTTTC 22 243 260 Antisense
CTTTGGCATAGCTGCACTTTCTCTG 449 223 264 Antisense
CTCTGTTTGGAGACGACACATTGGA 160 225 284 Antisense
GGAGACGACACATTGGAGTCAGTGG 169 519 292 Antisense
CGACACATTGGAGTCAGTGGACCCA 264 253 297 Antisense
GGAGTCAGTGGACCCAATTTTCTGC 40 517 306 Antisense
ACCCAATTTTCTGCATGACCAAGAG 226 91 317 Antisense
CTGCATGACCAAGAGATGTCTCGGT 84 237 327 Antisense
AGAGATGTCTCGGTGATAAGCAAGT 320 69 338 Antisense
Sequence Source Affymetrix Proprietary Database