[Home] | [Total List]

[174762_at]

Description CEK043E9R_rc /REP_DB=TREMBL Accession /GB=D34273 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e9 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 32
(3)
A 		5.7
(-2.7)
A 		4.1
(-3)
A 		4.2
(-3)
A 		28
B 25.7
(2.8)
A 		3.8
(-3)
A 		3.8
(-3)
A 		26.6
(3)
A 		23
C 3.5
(-3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		55.9
(3)
A 		52
avr 20.4
(1) 		4.3
(-2.9) 		3.8
(-3) 		28.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 4.5
(-2.7)
A 		3.2
(-2.9)
A 		3.1
(-2.9)
A 		2.5
(-3)
A 		3.6
(-2.9)
A 		48.7
(3)
A 		46
B 29.1
(3)
A 		3.4
(-2.4)
A 		3.3
(-2.5)
A 		0.7
(-3)
A 		24.9
(2.1)
A 		6.1
(-1.9)
A 		28
C 3.5
(-2.3)
A 		16
(1.1)
A 		23
(3)
A 		2.1
(-2.7)
A 		0.9
(-3)
A 		14.1
(0.6)
A 		22
avr 12.4
(0) 		7.5
(-1.4) 		9.8
(-0.7) 		1.8
(-3) 		9.8
(-0.7) 		23
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		1.2
(-2.7)
A 		1.1
(-2.7)
A 		0.6
(-3)
A 		11
B 8.2
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		5.7
(0.9)
A 		7
C 1.1
(-2.9)
A 		1
(-3)
A 		1.2
(-2.9)
A 		9.4
(3)
A 		8
avr 7
(3) 		1
(-3) 		1.1
(-2.9) 		5.2
(1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1.1
(-2.7)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		11.9
(3)
A 		11
B 10.1
(3)
A 		1.1
(-2.5)
A 		0.8
(-2.6)
A 		0.2
(-3)
A 		10.1
(3)
A 		2.3
(-1.7)
A 		10
C 1.3
(-1.9)
A 		4.9
(1.9)
A 		5.9
(3)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		4.7
(1.7)
A 		6
avr 4.1
(0.8) 		2.4
(-1) 		2.5
(-0.9) 		0.4
(-3) 		3.8
(0.5) 		6.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20974
Sequence Type Exemplar sequence
Representative Public ID CEK043E9R NCBI
Target Description CEK043E9R_rc /REP_DB=TREMBL Accession /GB=D34273 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171183 NCBI Caenorhabditis elegans B0280.1b (B0280.1) mRNA, complete cds. 11/11 None
B0280.1b ENSEMBL cdna:known chromosome:CEL140:III:7133807:7136356:1 gene:B0280.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175998 2 1 NM_171183 174762_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7135809-7136344(+) 95.53 100.0
Public Domain and Genome References
Ensembl B0280.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL50322 Hypothetical protein B0280.1b [Caenorhabditis elegans] ref|NP_741214.1| B0280.1b [Caenorhabditis elegans] 1.0E-177
blast T15296 hypothetical protein B0280.1 - Caenorhabditis elegans 1.0E-173
blast AAL50321 Hypothetical protein B0280.1a [Caenorhabditis elegans] ref|NP_498559.1| B0280.1a [Caenorhabditis elegans] sp|P41992|PFTB_CAEEL Probable protein farnesyltransferase beta subunit (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.2E-14
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.1E-13
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 1.0E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 3.4E-17
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 7.1E-6
Sequence
Target Sequence 
>C. ELEGANS:174762_AT
aatttgacactatcattcgattcgtatatgttagtcattatctgaagctctttcaacaga
tcgtctaaataactgaaaataataaaacattgtcggaacagctgaaaacgtttatttata
tacctgccagttgaacaattagttgatgactccgggatgctcatttcgcgttgcgtcgag
acggaagcgaatttcacgaagtggttaataaactattcggcggatccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGACACTATCATTCGATTCGT 504 173 25 Antisense
ATTCGATTCGTATATGTTAGTCATT 366 9 39 Antisense
GTTAGTCATTATCTGAAGCTCTTTC 177 447 54 Antisense
GAAGCTCTTTCAACAGATCGTCTAA 154 343 68 Antisense
ACATTGTCGGAACAGCTGAAAACGT 228 105 111 Antisense
AACGTTTATTTATATACCTGCCAGT 594 143 131 Antisense
ATACCTGCCAGTTGAACAATTAGTT 362 1 144 Antisense
TGATGACTCCGGGATGCTCATTTCG 222 567 168 Antisense
TGCTCATTTCGCGTTGCGTCGAGAC 558 577 182 Antisense
GCGTCGAGACGGAAGCGAATTTCAC 19 291 197 Antisense
TAATAAACTATTCGGCGGATCCCTT 64 633 230 Antisense
Sequence Source Affymetrix Proprietary Database