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[174761_at]

Description CEK041E5R_rc /REP_DB=TREMBL Accession /GB=D34136 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 88      6grp_total > 79      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 1534.1
(3)
P 		621.7
(-3)
P 		878.6
(-1.3)
P 		628.8
(-3)
P 		912
B 1510.5
(3)
P 		713.6
(-3)
P 		748.2
(-2.7)
P 		824.6
(-2.2)
P 		797
C 1264.4
(3)
P 		671.7
(-3)
P 		913.3
(-0.6)
P 		721.8
(-2.5)
P 		593
avr 1436.3
(3) 		669
(-3) 		846.7
(-1.6) 		725.1
(-2.6) 		767

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1297
1 2 3 4 5 6 range
A 1208.1
(-1.1)
P 		1307.3
(-0.4)
P 		929.8
(-3)
P 		1104.1
(-1.8)
P 		1795.4
(3)
P 		1781.8
(2.9)
P 		866
B 1258.1
(-1.2)
P 		1487.2
(0)
P 		903.1
(-3)
P 		1433.7
(-0.3)
P 		1376.6
(-0.6)
P 		2064.2
(3)
P 		1161
C 1284
(1.2)
P 		1500.5
(3)
P 		1433.9
(2.5)
P 		766.8
(-3)
P 		1148.6
(0.1)
P 		1385.4
(2.1)
P 		734
avr 1250.1
(-1.5) 		1431.7
(0.1) 		1088.9
(-3) 		1101.5
(-2.9) 		1440.2
(0.2) 		1743.8
(3) 		655
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 558.6
(3)
P 		135
(-2.4)
P 		229.7
(-1.2)
P 		92
(-3)
P 		467
B 481.7
(3)
P 		176.2
(-2.9)
P 		173.4
(-3)
P 		175.7
(-3)
P 		308
C 418.5
(3)
P 		193.1
(-1.6)
P 		318.3
(1)
P 		121.7
(-3)
P 		297
avr 486.3
(3) 		168.1
(-2.4) 		240.5
(-1.1) 		129.8
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 222.7
(-2.6)
P 		465
(1.6)
P 		202.5
(-3)
P 		280
(-1.6)
P 		541.8
(3)
P 		433.8
(1.1)
P 		339
B 437.8
(-0.6)
P 		495
(0)
P 		219.3
(-3)
P 		379.7
(-1.3)
P 		559.3
(0.7)
P 		769.7
(3)
P 		550
C 475.9
(3)
P 		457.9
(2.7)
P 		365
(0.9)
P 		154.2
(-3)
P 		371.7
(1.1)
P 		463.8
(2.8)
P 		322
avr 378.8
(-0.6) 		472.6
(1.3) 		262.3
(-3) 		271.3
(-2.8) 		490.9
(1.7) 		555.8
(3) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21746
Sequence Type Exemplar sequence
Representative Public ID CEK041E5R NCBI
Target Description CEK041E5R_rc /REP_DB=TREMBL Accession /GB=D34136 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171475(11), NM_171476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171475 NCBI Caenorhabditis elegans Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) (iri-1) mRNA, complete cds. 11/11 None
NM_171476 NCBI Caenorhabditis elegans Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) (iri-1) mRNA, complete cds. 11/11 None
F44C4.4a ENSEMBL cdna:known chromosome:CEL140:V:6609038:6613704:-1 gene:F44C4.4 11/11 None
F44C4.4b ENSEMBL cdna:known chromosome:CEL140:V:6609045:6613704:-1 gene:F44C4.4 11/11 A 
F44C4.4c ENSEMBL cdna:known chromosome:CEL140:V:6609050:6613757:-1 gene:F44C4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007884 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179052 3 2 NM_171475 174761_at (11)
NM_171476 174761_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6609054-6609423(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44C4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86229 Inositol 1,4,5-trisphosphate receptor interacting protein protein 1, isoform a [Caenorhabditis elegans] 0.0
blast NP_741557 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
blast NP_504681 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
blast AAY86230 Inositol 1,4,5-trisphosphate receptor interacting protein protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_741558 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:174761_AT
taatcccagctcatacatctgtacctcaattcactttagttatttgtcactagttggtat
tttcattgttttgtttttgttatgctacttgtttcgatatatccgcatgttgtttcaaat
tgactatgctaacgttttcttttctcatcgaccagtttacttccctgttctgtttaatag
ttctcaatcatgttatttttctcaatttttctgaagagtatcttatcatttctttttttc
tgtattcccaactcaccttgacatttctgaattgttgacccagcaagaaactttgcatac
cctctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCCAGCTCATACATCTGTACC 490 635 37 Antisense
ACATCTGTACCTCAATTCACTTTAG 94 107 51 Antisense
ATGCTACTTGTTTCGATATATCCGC 433 43 118 Antisense
GATATATCCGCATGTTGTTTCAAAT 83 427 132 Antisense
GACTATGCTAACGTTTTCTTTTCTC 59 373 158 Antisense
TTCTTTTCTCATCGACCAGTTTACT 352 689 173 Antisense
TTTACTTCCCTGTTCTGTTTAATAG 448 673 192 Antisense
AGTTCTCAATCATGTTATTTTTCTC 165 65 215 Antisense
TCTTTTTTTCTGTATTCCCAACTCA 438 613 267 Antisense
CCCAACTCACCTTGACATTTCTGAA 206 259 283 Antisense
CAAGAAACTTTGCATACCCTCTGAC 645 181 320 Antisense
Sequence Source Affymetrix Proprietary Database