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[174760_at]

Description CEK040H9R_rc /REP_DB=TREMBL Accession /GB=D34099 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 79      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 97      6grp_total > 78      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1167
1 2 3 4 range
A 1598.1
(3)
P 		997.8
(-1.8)
P 		844.9
(-3)
P 		1479.4
(2.1)
P 		753
B 1282.1
(-1.5)
P 		1046.1
(-3)
P 		1534
(0)
P 		2012.2
(3)
P 		966
C 855.9
(-3)
P 		999.2
(-1.7)
P 		954.8
(-2.1)
P 		1521.2
(3)
P 		665
avr 1245.4
(-0.9) 		1014.4
(-3) 		1111.2
(-2.1) 		1670.9
(3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1561
1 2 3 4 5 6 range
A 833
(-0.4)
P 		982.5
(0.9)
P 		805.9
(-0.7)
P 		539
(-3)
P 		1071.2
(1.7)
P 		1221
(3)
P 		682
B 796.7
(-2.7)
P 		724
(-3)
P 		958.1
(-1.9)
P 		731.9
(-3)
P 		1193.4
(-0.8)
P 		2009.2
(3)
P 		1285
C 835.2
(0.2)
P 		783.5
(-0.2)
P 		1061.8
(2.1)
P 		448.5
(-3)
P 		941.2
(1.1)
P 		1171.1
(3)
P 		723
avr 821.6
(-1.3) 		830
(-1.3) 		941.9
(-0.5) 		573.1
(-3) 		1068.6
(0.3) 		1467.1
(3) 		894
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 581.9
(3)
P 		216.6
(-3)
P 		220.9
(-2.9)
P 		216.6
(-3)
P 		365
B 408.9
(2.3)
P 		258.4
(-3)
P 		355.5
(0.4)
P 		428.8
(3)
P 		170
C 283.3
(-0.9)
P 		287.3
(-0.6)
P 		332.8
(3)
P 		256.5
(-3)
P 		76
avr 424.7
(3) 		254.1
(-3) 		303.1
(-1.3) 		300.6
(-1.4) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 153.6
(-2.5)
P 		349.4
(3)
P 		175.5
(-1.9)
P 		136.7
(-3)
P 		323.2
(2.3)
P 		297.3
(1.5)
P 		213
B 277.2
(-2.1)
P 		241
(-2.5)
P 		232.6
(-2.6)
P 		193.9
(-3)
P 		484.9
(0.1)
P 		749.2
(3)
P 		555
C 309.6
(1.4)
P 		239.1
(-0)
P 		270.2
(0.6)
P 		90.2
(-3)
P 		304.6
(1.3)
P 		392
(3)
P 		302
avr 246.8
(-1.1) 		276.5
(-0.6) 		226.1
(-1.5) 		140.3
(-3) 		370.9
(1.1) 		479.5
(3) 		339
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20436
Sequence Type Exemplar sequence
Representative Public ID CEK040H9R NCBI
Target Description CEK040H9R_rc /REP_DB=TREMBL Accession /GB=D34099 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058343 NCBI Caenorhabditis elegans Y65B4BL.5 (Y65B4BL.5) mRNA, complete cds. 11/11 None
Y65B4BL.5 ENSEMBL cdna:known chromosome:CEL140:I:511018:516465:-1 gene:Y65B4BL.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:511070-511451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4BL.5
Entrez Gene 171643 Entrez gene
SwissProt Q9N302 EMBL-EBI
WormBase CE24550 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18330_AT long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase at
ATH1-121501:254192_AT long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase at
CANINE:1598975_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
CANINE:1593625_S_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
CANINE:1591532_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
CANINE_2:CFA.15234.1.S1_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
CANINE_2:CFA.20899.1.S1_S_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
CANINE_2:CFAAFFX.12394.1.S1_S_AT similar to acyl-CoA synthetase long-chain family member 1 cfa
DROSOPHILA_2:1637109_S_AT dm
DROSGENOME1:141534_AT dm
CHICKEN:GGA.18942.1.S1_AT acyl-CoA synthetase long-chain family member 1 gga
CHICKEN:GGAAFFX.23274.2.S1_S_AT acyl-CoA synthetase long-chain family member 1 gga
HG-FOCUS:201963_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133A:201963_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133A_2:201963_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133_PLUS_2:201963_AT acyl-CoA synthetase long-chain family member 1 hs
HUGENEFL:D10040_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133_PLUS_2:207275_S_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133A:207275_S_AT acyl-CoA synthetase long-chain family member 1 hs
HG-FOCUS:207275_S_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U133A_2:207275_S_AT acyl-CoA synthetase long-chain family member 1 hs
HU35KSUBD:RC_AA348922_S_AT acyl-CoA synthetase long-chain family member 1 hs
HUGENEFL:L09229_S_AT acyl-CoA synthetase long-chain family member 1 hs
U133_X3P:G4503650_3P_S_AT acyl-CoA synthetase long-chain family member 1 hs
U133_X3P:G12669906_3P_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U95AV2:40082_AT acyl-CoA synthetase long-chain family member 1 hs
HG-U95D:83453_AT Acyl-CoA synthetase long-chain family member 1 hs
MU11KSUBB:MSA.1332.0_AT acyl-CoA synthetase long-chain family member 1 mm
MG-U74AV2:94507_AT acyl-CoA synthetase long-chain family member 1 mm
MOE430A:1423883_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430A_2:1423883_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430_2:1423883_AT acyl-CoA synthetase long-chain family member 1 mm
MOE430A:1450643_S_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430A_2:1450643_S_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430_2:1450643_S_AT acyl-CoA synthetase long-chain family member 1 mm
MOE430A:1422526_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430A_2:1422526_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430_2:1422526_AT acyl-CoA synthetase long-chain family member 1 mm
MOE430A:1460316_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430A_2:1460316_AT acyl-CoA synthetase long-chain family member 1 mm
MOUSE430_2:1460316_AT acyl-CoA synthetase long-chain family member 1 mm
MU19KSUBB:TC34536_AT Acyl-CoA synthetase long-chain family member 1 (Acsl1), mRNA mm
RG-U34A:D90109_AT acyl-CoA synthetase long-chain family member 1 rn
RG-U34A:RC_AI044900_S_AT acyl-CoA synthetase long-chain family member 1 rn
RG-U34A:RC_AA893242_G_AT acyl-CoA synthetase long-chain family member 1 rn
RG-U34A:RC_AA893242_AT acyl-CoA synthetase long-chain family member 1 rn
RAE230A:1370939_AT acyl-CoA synthetase long-chain family member 1 rn
RAT230_2:1370939_AT acyl-CoA synthetase long-chain family member 1 rn
RAE230A:1388153_AT acyl-CoA synthetase long-chain family member 1 rn
RAT230_2:1388153_AT acyl-CoA synthetase long-chain family member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60848 Hypothetical protein Y65B4BL.5 [Caenorhabditis elegans] ref|NP_490744.1| Y65B4BL.5 [Caenorhabditis elegans] 0.0
blast CAE61287 Hypothetical protein CBG05109 [Caenorhabditis briggsae] 0.0
blast NP_001026408 acyl-CoA synthetase long-chain family member 5 [Gallus gallus] emb|CAG32476.1| hypothetical protein [Gallus gallus] 0.0
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.1E-39
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 4.4E-50
Sequence
Target Sequence 
>C. ELEGANS:174760_AT
ccctcattccttatgctcaaacattgatattttcgttgttttgtttcaatccaaataatt
ccattaacttgatttcattaacgggtatacgctttcttcctccctctctcgatattcacg
ttcggtttatcagtttatcatcggcttgttcccatttattgattgttttatcgcaagtac
acaaaacatttcactttattatttccattttccctcaccttcccccctaccctatgtatt
tagacgacagagttattgaatatagtaattggttaatatattacacgtgaaaaactattg
tactggcatttactgtgattgttttactttattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCATTCCTTATGCTCAAACATT 384 259 29 Antisense
CATTCCTTATGCTCAAACATTGATA 220 215 33 Antisense
ACATTGATATTTTCGTTGTTTTGTT 331 105 49 Antisense
GTTGTTTTGTTTCAATCCAAATAAT 414 437 63 Antisense
ATAATTCCATTAACTTGATTTCATT 579 25 83 Antisense
TCATTAACGGGTATACGCTTTCTTC 10 613 103 Antisense
CCTCTCTCGATATTCACGTTCGGTT 446 267 131 Antisense
CTCTCGATATTCACGTTCGGTTTAT 112 229 134 Antisense
TCACGTTCGGTTTATCAGTTTATCA 401 625 144 Antisense
GGCATTTACTGTGATTGTTTTACTT 460 537 333 Antisense
TACTGTGATTGTTTTACTTTATTGC 223 645 339 Antisense
Sequence Source Affymetrix Proprietary Database