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[174759_s_at]

Description CEK032F2R_rc /REP_DB=TREMBL Accession /GB=D33552 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 39      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 565.8
(3)
P 		171
(-3)
P 		459.2
(1.4)
P 		356.8
(-0.2)
P 		395
B 549.1
(1.6)
P 		364.5
(-3)
P 		375
(-2.7)
P 		602.9
(3)
P 		238
C 736.3
(3)
P 		351.7
(-3)
P 		602
(0.9)
P 		395.6
(-2.3)
P 		385
avr 617.1
(3) 		295.7
(-3) 		478.7
(0.4) 		451.8
(-0.1) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 312.8
(-3)
P 		371
(-2.3)
P 		399.9
(-2)
P 		342.2
(-2.7)
P 		784.1
(2.5)
P 		828.3
(3)
P 		516
B 519.1
(-1.9)
P 		406.5
(-3)
P 		411.4
(-3)
P 		511.7
(-2)
P 		715.7
(0.1)
P 		1011.7
(3)
P 		605
C 399
(-2.1)
P 		405.6
(-2)
P 		364
(-2.4)
P 		299.9
(-3)
P 		740
(1.2)
P 		932.9
(3)
P 		633
avr 410.3
(-2.7) 		394.4
(-2.9) 		391.8
(-2.9) 		384.6
(-3) 		746.6
(1) 		924.3
(3) 		540
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 206
(3)
P 		37.1
(-3)
P 		120
(-0.1)
P 		52.2
(-2.5)
P 		169
B 175.1
(3)
P 		90
(-2.8)
P 		86.9
(-3)
P 		128.5
(-0.2)
P 		88
C 243.8
(3)
P 		101.1
(-1.8)
P 		209.8
(1.8)
P 		66.7
(-3)
P 		177
avr 208.3
(3) 		76.1
(-3) 		138.9
(-0.1) 		82.5
(-2.7) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 57.7
(-3)
P 		131.9
(-0.5)
P 		87.1
(-2)
P 		86.8
(-2)
P 		236.6
(3)
P 		201.7
(1.8)
P 		179
B 180.6
(-1.3)
P 		135.3
(-2.2)
P 		99.9
(-3)
P 		135.5
(-2.2)
P 		290.8
(1.1)
P 		377.3
(3)
P 		277
C 147.9
(-0.9)
P 		123.8
(-1.5)
P 		92.7
(-2.2)
P 		60.3
(-3)
P 		239.5
(1.3)
P 		312.3
(3)
P 		252
avr 128.7
(-2) 		130.3
(-1.9) 		93.2
(-3) 		94.2
(-3) 		255.6
(1.8) 		297.1
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174759_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21680
Sequence Type Exemplar sequence
Representative Public ID CEK032F2R NCBI
Target Description CEK032F2R_rc /REP_DB=TREMBL Accession /GB=D33552 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073008 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-153) (tag-153) mRNA, complete cds. 11/11 None
F44A2.1b ENSEMBL cdna:known chromosome:CEL140:V:9325795:9329793:1 gene:F44A2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179312 2 1 NM_073008 174758_at (11), 174759_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9329386-9329769(+) 100.0 100.0
Public Domain and Genome References
Ensembl F44A2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83450 Temporarily assigned gene name protein 153, isoform b [Caenorhabditis elegans] ref|NP_505409.1| Temporarily Assigned Gene name family member (tag-153) [Caenorhabditis elegans] 0.0
blast AAA83449 Temporarily assigned gene name protein 153, isoform a [Caenorhabditis elegans] ref|NP_505410.1| Temporarily Assigned Gene name family member (tag-153) [Caenorhabditis elegans] 0.0
blast CAE72152 Hypothetical protein CBG19250 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 6.9E-72
Sequence
Target Sequence 
>C. ELEGANS:174759_S_AT
aatatattatgttccattttccacataatcaaattaccatgttcttattagaatctgcta
gatttttgacaattccccttgttttggtatcatattccattcaagatattatttctctct
cacagacagggatctccattgacatgtgtacgaatggcccatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATATTATGTTCCATTTTCCACA 643 173 70 Antisense
CATTTTCCACATAATCAAATTACCA 616 215 84 Antisense
ATCAAATTACCATGTTCTTATTAGA 288 27 97 Antisense
ACCATGTTCTTATTAGAATCTGCTA 202 87 105 Antisense
GCTAGATTTTTGACAATTCCCCTTG 293 303 126 Antisense
AATTCCCCTTGTTTTGGTATCATAT 354 177 140 Antisense
GTTTTGGTATCATATTCCATTCAAG 624 447 150 Antisense
CAAGATATTATTTCTCTCTCACAGA 539 183 171 Antisense
TCTCTCACAGACAGGGATCTCCATT 127 613 185 Antisense
GGGATCTCCATTGACATGTGTACGA 659 495 198 Antisense
GACATGTGTACGAATGGCCCATTTT 404 369 210 Antisense
Sequence Source Affymetrix Proprietary Database