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[174758_at]

Description CEK032F2R_rc /REP_DB=TREMBL Accession /GB=D33552 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32f2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 98      6grp_total > 87      4grp_total > 07      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 1031.5
(2.5)
P 		497.9
(-3)
P 		726.4
(-0.6)
P 		1079.1
(3)
P 		581
B 995.7
(2)
P 		537.4
(-3)
P 		757.3
(-0.6)
P 		1089.3
(3)
P 		552
C 933.6
(3)
P 		470
(-3)
P 		752.3
(0.7)
P 		875.4
(2.2)
P 		464
avr 986.9
(2.7) 		501.8
(-3) 		745.3
(-0.2) 		1014.6
(3) 		513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1230
1 2 3 4 5 6 range
A 521.4
(-3)
P 		735
(-1.9)
P 		565.6
(-2.8)
P 		736
(-1.8)
P 		1444.7
(2)
P 		1636.6
(3)
P 		1115
B 790.4
(-2.6)
P 		725.5
(-3)
P 		938.9
(-1.7)
P 		1048.4
(-1)
P 		1072.2
(-0.9)
P 		1710.3
(3)
P 		985
C 565.4
(-2.7)
P 		735.2
(-1.9)
P 		512.8
(-3)
P 		910.5
(-1.1)
P 		1123.2
(-0)
P 		1742.6
(3)
P 		1230
avr 625.7
(-3) 		731.9
(-2.4) 		672.4
(-2.7) 		898.3
(-1.5) 		1213.4
(0.3) 		1696.5
(3) 		1071
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 375.6
(3)
P 		108.1
(-3)
P 		189.9
(-1.2)
P 		158
(-1.9)
P 		268
B 317.5
(3)
P 		132.7
(-3)
P 		175.5
(-1.6)
P 		232.1
(0.2)
P 		185
C 309
(3)
P 		135.1
(-3)
P 		262.2
(1.4)
P 		147.6
(-2.6)
P 		174
avr 334
(3) 		125.3
(-3) 		209.2
(-0.6) 		179.2
(-1.5) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 96.1
(-3)
P 		261.4
(-0.1)
P 		123.2
(-2.5)
P 		186.7
(-1.4)
P 		436
(3)
P 		398.5
(2.3)
P 		340
B 275
(-2.3)
P 		241.5
(-2.8)
P 		228
(-3)
P 		277.7
(-2.3)
P 		435.6
(0)
P 		637.8
(3)
P 		410
C 209.6
(-2)
P 		224.3
(-1.8)
P 		130.5
(-3)
P 		183.1
(-2.3)
P 		363.5
(0.1)
P 		583.4
(3)
P 		453
avr 193.6
(-2.5) 		242.4
(-1.7) 		160.6
(-3) 		215.8
(-2.1) 		411.7
(1) 		539.9
(3) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21680
Sequence Type Exemplar sequence
Representative Public ID CEK032F2R NCBI
Target Description CEK032F2R_rc /REP_DB=TREMBL Accession /GB=D33552 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32f2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073008 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-153) (tag-153) mRNA, complete cds. 11/11 None
F44A2.1b ENSEMBL cdna:known chromosome:CEL140:V:9325795:9329793:1 gene:F44A2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179312 2 1 NM_073008 174758_at (11), 174759_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9329386-9329769(+) 100.0 100.0
Public Domain and Genome References
Ensembl F44A2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83450 Temporarily assigned gene name protein 153, isoform b [Caenorhabditis elegans] ref|NP_505409.1| Temporarily Assigned Gene name family member (tag-153) [Caenorhabditis elegans] 0.0
blast AAA83449 Temporarily assigned gene name protein 153, isoform a [Caenorhabditis elegans] ref|NP_505410.1| Temporarily Assigned Gene name family member (tag-153) [Caenorhabditis elegans] 0.0
blast CAE72152 Hypothetical protein CBG19250 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007282 EMBL-EBI NOT2/NOT3/NOT5 6.9E-72
Sequence
Target Sequence 
>C. ELEGANS:174758_AT
tactggaaatcgaatcacaatgtgatgatgctttccatgtccctcaacaaaaatatatta
tgttccattttccacataatcaaattaccatgttcttattagaatctgctagatttttga
caattccccttgttttggtatcatattccattcaagatattatttctctctcacagacag
ggatctccattgacatgtgtacgaatggcccattttttgtcctattcgcccctttccccg
accatcctggtagttcccatcattcccccataccaatgcatcccgtttttatacaacagt
cttatacttctcgattcggtagaagactagctttttctatatcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGGAAATCGAATCACAATGTGA 506 647 19 Antisense
AATGTGATGATGCTTTCCATGTCCC 669 163 37 Antisense
GCTTTCCATGTCCCTCAACAAAAAT 640 303 48 Antisense
TTCCATGTCCCTCAACAAAAATATA 15 701 51 Antisense
CATACCAATGCATCCCGTTTTTATA 601 211 287 Antisense
ACCAATGCATCCCGTTTTTATACAA 699 83 290 Antisense
GCATCCCGTTTTTATACAACAGTCT 535 305 296 Antisense
ACAACAGTCTTATACTTCTCGATTC 162 111 311 Antisense
GTCTTATACTTCTCGATTCGGTAGA 175 469 317 Antisense
GATTCGGTAGAAGACTAGCTTTTTC 504 431 331 Antisense
AAGACTAGCTTTTTCTATATCATTT 77 153 341 Antisense
Sequence Source Affymetrix Proprietary Database