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[174757_at]

Description CEK005DXR_rc /REP_DB=TREMBL Accession /GB=D34519 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 93      6grp_total > 79      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 450.2
(3)
P 		129.7
(-3)
P 		217.8
(-1.4)
P 		194.8
(-1.8)
P 		321
B 549.4
(3)
P 		161
(-3)
P 		182.4
(-2.7)
P 		429.4
(1.1)
P 		388
C 587.8
(3)
P 		317.8
(-1.8)
P 		248.8
(-3)
P 		487.4
(1.2)
P 		339
avr 529.1
(3) 		202.8
(-3) 		216.3
(-2.8) 		370.5
(0.1) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 254.5
(-3)
P 		395.6
(-0.5)
P 		494
(1.2)
P 		340.6
(-1.5)
P 		593.2
(3)
P 		400.5
(-0.4)
P 		339
B 462.6
(-0.6)
P 		658.8
(0.9)
P 		152
(-3)
P 		216.3
(-2.5)
P 		363.9
(-1.4)
P 		925
(3)
P 		773
C 236.3
(-2.9)
P 		684.3
(1.2)
P 		300.1
(-2.3)
P 		227.9
(-3)
P 		262.1
(-2.7)
P 		881.6
(3)
P 		654
avr 317.8
(-2.3) 		579.6
(1) 		315.4
(-2.3) 		261.6
(-3) 		406.4
(-1.2) 		735.7
(3) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 163.9
(3)
P 		28.2
(-3)
P 		56.9
(-1.7)
P 		28.5
(-3)
P 		136
B 175.2
(3)
P 		39.8
(-3)
P 		42.3
(-2.9)
P 		91.5
(-0.7)
P 		135
C 194.6
(3)
P 		91.4
(-2.5)
P 		86.7
(-2.8)
P 		82.2
(-3)
P 		112
avr 177.9
(3) 		53.1
(-3) 		62
(-2.6) 		67.4
(-2.3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 46.9
(-3)
P 		140.7
(1.3)
P 		107.6
(-0.2)
P 		86.4
(-1.2)
P 		179
(3)
P 		97.5
(-0.7)
P 		132
B 161
(-0.6)
P 		219.3
(0.6)
P 		36.9
(-3)
P 		57.3
(-2.6)
P 		147.9
(-0.8)
P 		344.9
(3)
P 		308
C 87.6
(-2)
P 		208.8
(0.9)
P 		76.4
(-2.3)
P 		45.8
(-3)
P 		84.8
(-2.1)
P 		295.1
(3)
P 		249
avr 98.5
(-1.8) 		189.6
(1.2) 		73.6
(-2.7) 		63.2
(-3) 		137.2
(-0.6) 		245.8
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20473
Sequence Type Exemplar sequence
Representative Public ID CEK005DXR NCBI
Target Description CEK005DXR_rc /REP_DB=TREMBL Accession /GB=D34519 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk5d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02C4.3 ENSEMBL cdna:known chromosome:CEL140:II:8080747:8087107:-1 gene:K02C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018328 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8080753-8081103(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02C4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87786 Hypothetical protein K02C4.3 [Caenorhabditis elegans] ref|NP_495696.1| K02C4.3 [Caenorhabditis elegans] sp|Q09931|UBPY_CAEEL Probable ubiquitin carboxyl-terminal hydrolase K02C4.3 (Ubiquitin thiolesterase) (Ubiquitin-specific processing protease) (Deubiquitinating enzyme) 0.0
blast CAE57727 Hypothetical protein CBG00738 [Caenorhabditis briggsae] 0.0
blast XP_221722 PREDICTED: similar to Ubiquitin specific protease 25 [Rattus norvegicus] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 3.9E-115
Sequence
Target Sequence 
>C. ELEGANS:174757_AT
atgttctcaaccaatagtattgattgaggtattgaaatgtgattttattttctgtaatgt
taacttttacattattattatgttaaatttaaccaatattcagcacttcatttgattagc
atatttttttctttcaaaacaaacatagccattttctttttttatttacgtttcccccgt
tgagtttctatcattttgcggtttaaactgagagtttctcctgtgagaattgtatccata
tttagctcatttggaggtttcattacgattatatgtgcgtattctggtatatcgttaact
ctaatattatcttttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCTCAACCAATAGTATTGATT 127 47 13 Antisense
CAAAACAAACATAGCCATTTTCTTT 347 191 147 Antisense
TCCCCCGTTGAGTTTCTATCATTTT 338 597 185 Antisense
TGAGTTTCTATCATTTTGCGGTTTA 647 565 193 Antisense
TAAACTGAGAGTTTCTCCTGTGAGA 59 641 216 Antisense
TCTCCTGTGAGAATTGTATCCATAT 333 611 229 Antisense
ATTGTATCCATATTTAGCTCATTTG 358 5 241 Antisense
TTTGGAGGTTTCATTACGATTATAT 333 665 262 Antisense
ACGATTATATGTGCGTATTCTGGTA 701 93 277 Antisense
GTATTCTGGTATATCGTTAACTCTA 580 451 291 Antisense
GTTAACTCTAATATTATCTTTTATA 10 447 306 Antisense
Sequence Source Affymetrix Proprietary Database