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[174756_at]

Description CEK023F6R_rc /REP_DB=TREMBL Accession /GB=D32933 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23f6 : 3prime end, single read.
Cluster 6grp_total > 04      4grp_total > 62      6grp_cgc > 31      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 150
(3)
P 		92.2
(-1.4)
A 		117
(0.5)
M 		70.5
(-3)
A 		80
B 138.8
(3)
A 		120.3
(0.4)
P 		118.3
(0.1)
P 		96.2
(-3)
A 		43
C 136.8
(1.6)
P 		143.7
(3)
A 		129.6
(0.1)
P 		114.2
(-3)
M 		30
avr 141.9
(3) 		118.7
(0.1) 		121.6
(0.5) 		93.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 95.4
(0.3)
A 		127
(3)
A 		76.6
(-1.3)
A 		97.9
(0.5)
A 		66.5
(-2.1)
A 		56
(-3)
A 		71
B 139
(3)
P 		104.1
(0.7)
P 		121.3
(1.8)
P 		72
(-1.4)
A 		47.6
(-3)
A 		61
(-2.1)
A 		91
C 204.6
(3)
P 		79.7
(-1.3)
A 		72.3
(-1.6)
A 		98.9
(-0.6)
A 		115.9
(-0.1)
P 		30.5
(-3)
A 		174
avr 146.3
(3) 		103.6
(0.4) 		90.1
(-0.5) 		89.6
(-0.5) 		76.7
(-1.3) 		49.2
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 54.6
(3)
P 		20
(-1.7)
A 		30.6
(-0.3)
M 		10.3
(-3)
A 		44
B 44.3
(3)
A 		29.7
(-0.7)
P 		27.4
(-1.3)
P 		20.5
(-3)
A 		24
C 45.3
(3)
P 		41.3
(2.1)
A 		45.2
(3)
P 		19.3
(-3)
M 		26
avr 48.1
(3) 		30.3
(-0.4) 		34.4
(0.4) 		16.7
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 17.6
(-2.2)
A 		45.2
(3)
A 		16.7
(-2.4)
A 		24.8
(-0.9)
A 		20.1
(-1.8)
A 		13.6
(-3)
A 		32
B 48.4
(3)
P 		34.7
(0.2)
P 		29.5
(-0.9)
P 		19.1
(-3)
A 		19.3
(-3)
A 		22.7
(-2.3)
A 		29
C 75.8
(3)
P 		24.3
(-1.7)
A 		18.4
(-2.3)
A 		19.9
(-2.1)
A 		37.5
(-0.5)
P 		10.2
(-3)
A 		66
avr 47.3
(3) 		34.7
(0.6) 		21.5
(-1.9) 		21.3
(-1.9) 		25.6
(-1.1) 		15.5
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21052
Sequence Type Exemplar sequence
Representative Public ID CEK023F6R NCBI
Target Description CEK023F6R_rc /REP_DB=TREMBL Accession /GB=D32933 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065293 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-1) (gei-1) mRNA, complete cds. 11/11 None
F45H7.2a ENSEMBL cdna:known chromosome:CEL140:III:3355588:3363403:1 gene:F45H7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175436 2 1 NM_065293 174756_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3363035-3363393(+) 100.0 100.0
Public Domain and Genome References
Ensembl F45H7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84324 Hypothetical protein F45H7.2a [Caenorhabditis elegans] ref|NP_497694.2| GEX Interacting protein family member (gei-1) [Caenorhabditis elegans] 0.0
blast CAA84322 Hypothetical protein F45H7.2b [Caenorhabditis elegans] ref|NP_497695.2| GEX Interacting protein family member (gei-1) [Caenorhabditis elegans] 0.0
blast CAE65017 Hypothetical protein CBG09855 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 2.3E-6
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.4E-56
Sequence
Target Sequence 
>C. ELEGANS:174756_AT
tagtcagggaacgaaaagccatgtaaaacctcattcttcccggttttctttgttttttta
ctaaaaaatcggtgctccagaaaattagcttatttgaccccgcctctttttttgcaaggt
gggcgcacgtttttcaaaaaatgttgattatctggaatacccttacctccttcttttgtt
tttttgtcactttcacccctcccgattaatatttatttgttaagttatcaattttttccc
agtgccttttccatttttttcaacacagttttccaatttttatatctccgaaaattccag
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCAGGGAACGAAAAGCCATGTA 44 399 21 Antisense
AGCCATGTAAAACCTCATTCTTCCC 580 83 37 Antisense
CATGTAAAACCTCATTCTTCCCGGT 188 149 40 Antisense
TTTACTAAAAAATCGGTGCTCCAGA 429 223 77 Antisense
CAGAAAATTAGCTTATTTGACCCCG 466 203 98 Antisense
GCCTCTTTTTTTGCAAGGTGGGCGC 56 283 122 Antisense
GCAAGGTGGGCGCACGTTTTTCAAA 421 315 134 Antisense
ATTATCTGGAATACCCTTACCTCCT 286 13 167 Antisense
TCACCCCTCCCGATTAATATTTATT 645 625 213 Antisense
AGTTATCAATTTTTTCCCAGTGCCT 629 63 243 Antisense
TTTTTATATCTCCGAAAATTCCAGT 562 673 297 Antisense
Sequence Source Affymetrix Proprietary Database