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[174755_s_at]

Description CEK063H1R_rc /REP_DB=TREMBL Accession /GB=D71222 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 23      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 275.5
(2.7)
P 		228.8
(-0.1)
P 		178.8
(-3)
P 		280.7
(3)
P 		102
B 302.8
(3)
P 		191.8
(-1.8)
P 		211.7
(-0.9)
P 		163.7
(-3)
P 		139
C 288.3
(0.9)
P 		145.5
(-3)
P 		223.5
(-0.9)
P 		366.4
(3)
P 		221
avr 288.9
(3) 		188.7
(-3) 		204.7
(-2) 		270.3
(1.9) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 204.8
(-2.8)
P 		209.3
(-2.7)
P 		194.7
(-3)
P 		257.2
(-1.5)
P 		327.2
(0.2)
P 		445.1
(3)
P 		250
B 218.1
(-3)
P 		249.7
(-2.4)
P 		284.8
(-1.7)
P 		291.2
(-1.5)
P 		325.4
(-0.9)
P 		519.2
(3)
P 		301
C 213.2
(-2.8)
P 		324.6
(-0.3)
P 		210.1
(-2.8)
P 		202.8
(-3)
P 		322.8
(-0.4)
P 		476.3
(3)
P 		274
avr 212
(-3) 		261.2
(-1.9) 		229.9
(-2.6) 		250.4
(-2.1) 		325.1
(-0.5) 		480.2
(3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 100.3
(3)
P 		49.7
(-2.1)
P 		46.7
(-2.4)
P 		41.1
(-3)
P 		59
B 96.5
(3)
P 		47.4
(-1.8)
P 		49.1
(-1.6)
P 		34.9
(-3)
P 		62
C 95.4
(3)
P 		41.8
(-3)
P 		77.9
(1)
P 		61.8
(-0.8)
P 		54
avr 97.4
(3) 		46.3
(-3) 		57.9
(-1.6) 		45.9
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 37.7
(-3)
P 		74.4
(0.1)
P 		42.4
(-2.6)
P 		65.2
(-0.7)
P 		98.7
(2.2)
P 		108.4
(3)
P 		71
B 75.9
(-2.7)
P 		83.1
(-2.3)
P 		69.2
(-3)
P 		77.1
(-2.6)
P 		132.2
(0)
P 		193.6
(3)
P 		124
C 79
(-1.1)
P 		99
(-0.1)
P 		53.5
(-2.4)
P 		40.8
(-3)
P 		104.5
(0.2)
P 		159.4
(3)
P 		119
avr 64.2
(-2.4) 		85.5
(-1.1) 		55
(-3) 		61
(-2.6) 		111.8
(0.4) 		153.8
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174755_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20595
Sequence Type Exemplar sequence
Representative Public ID CEK063H1R NCBI
Target Description CEK063H1R_rc /REP_DB=TREMBL Accession /GB=D71222 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064125 NCBI Caenorhabditis elegans Y6D1A.1 (Y6D1A.1) mRNA, complete cds. 11/11 A 
SNAP00000024143 ENSEMBL cdna:SNAP chromosome:CEL140:II:11821387:11823505:-1 11/11 None
GENEFINDER00000024147 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11820489:11823505:-1 11/11 None
Y6D1A.1 ENSEMBL cdna:known chromosome:CEL140:II:11820489:11823523:-1 gene:Y6D1A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11821308-11821655(-) 100.0 100.0
chrII:11820410-11820757(-) 95.97 95.97
Public Domain and Genome References
Gene Title
Ensembl Y6D1A.1
Entrez Gene 174818 Entrez gene
SwissProt Q9U1S8 EMBL-EBI
WormBase CE21324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60580 Hypothetical protein Y6D1A.1 [Caenorhabditis elegans] ref|NP_496526.1| Y6D1A.1 [Caenorhabditis elegans] 0.0
blast CAE68179 Hypothetical protein CBG13839 [Caenorhabditis briggsae] 8.0E-26
blast CAC15861 Hypothetical protein T27D12.4 [Caenorhabditis elegans] emb|CAC15867.1| Hypothetical protein T27D12.4 [Caenorhabditis elegans] ref|NP_496527.1| Patterned Expression Site family member (pes-5) [Caenorhabditis elegans] 3.0E-21
blast CAC15861 Hypothetical protein T27D12.4 [Caenorhabditis elegans] emb|CAC15867.1| Hypothetical protein T27D12.4 [Caenorhabditis elegans] ref|NP_496527.1| Patterned Expression Site family member (pes-5) [Caenorhabditis elegans] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:174755_S_AT
caagcacccatgtgtactctgtggcaatcggcatacggtagatcaatgctttaaaattat
caatgtgaacaaccgaagagaagcattgctcatgggtggacgatgcaccagatgtcttgg
aaaacattcgttccagacttgtcgtcgtgtggaatcacatgtatgtcgatattgcaatga
tgaggatccaaacgttgaacttcataattatgggctctgtccaaagcctactccgagcca
aaagccagcggaagatgaatctgcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCACCCATGTGTACTCTGTGGC 430 185 14 Antisense
TACTCTGTGGCAATCGGCATACGGT 351 643 28 Antisense
ATACGGTAGATCAATGCTTTAAAAT 284 23 46 Antisense
GAGAAGCATTGCTCATGGGTGGACG 191 391 91 Antisense
GGGTGGACGATGCACCAGATGTCTT 58 497 107 Antisense
AAACATTCGTTCCAGACTTGTCGTC 34 129 135 Antisense
AGACTTGTCGTCGTGTGGAATCACA 418 71 148 Antisense
GAACTTCATAATTATGGGCTCTGTC 43 351 210 Antisense
TATGGGCTCTGTCCAAAGCCTACTC 82 657 222 Antisense
CCTACTCCGAGCCAAAAGCCAGCGG 665 265 240 Antisense
GCCAGCGGAAGATGAATCTGCTTTA 172 281 257 Antisense
Sequence Source Affymetrix Proprietary Database