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[174753_at]

Description CEK053H1R_rc /REP_DB=TREMBL Accession /GB=D64523 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53h1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 10      6grp_total > 79      4grp_total > 29      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 142.6
(3)
P 		82.9
(-3)
P 		102.8
(-1)
P 		136.6
(2.4)
P 		60
B 146.1
(3)
P 		143.2
(2.8)
P 		71.8
(-3)
P 		145.4
(2.9)
P 		74
C 111.9
(3)
P 		91.5
(-2)
P 		87.5
(-3)
P 		99.3
(-0.1)
M 		24
avr 133.5
(3) 		105.9
(-0.6) 		87.4
(-3) 		127.1
(2.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 265
(0.3)
P 		238
(-0.3)
P 		117.1
(-3)
P 		121.7
(-2.9)
P 		316.4
(1.4)
P 		388.3
(3)
P 		271
B 244.9
(0.1)
P 		141.9
(-3)
P 		142.9
(-3)
P 		177.3
(-1.9)
P 		225.4
(-0.5)
P 		342.8
(3)
P 		201
C 197.6
(-0.7)
P 		160
(-1.9)
P 		214.6
(-0.2)
P 		121.7
(-3)
A 		284.2
(1.9)
P 		322.1
(3)
P 		200
avr 235.8
(-0.3) 		180
(-1.9) 		158.2
(-2.5) 		140.2
(-3) 		275.3
(0.8) 		351.1
(3) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 51.9
(3)
P 		18
(-3)
P 		26.9
(-1.4)
P 		20
(-2.6)
P 		34
B 46.6
(3)
P 		35.4
(0.8)
P 		16.6
(-3)
P 		31
(-0.1)
P 		30
C 37
(3)
P 		26.3
(-0.2)
P 		30.5
(1.1)
P 		16.7
(-3)
M 		20
avr 45.2
(3) 		26.6
(-1.9) 		24.7
(-2.4) 		22.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 48.9
(-1)
P 		84.6
(2.1)
P 		25.5
(-3)
P 		30.9
(-2.5)
P 		95.5
(3)
P 		94.5
(2.9)
P 		70
B 85.2
(0.3)
P 		47.2
(-2.2)
P 		34.7
(-3)
P 		47
(-2.2)
P 		91.6
(0.7)
P 		127.8
(3)
P 		93
C 73.2
(0.5)
P 		48.8
(-1.2)
P 		54.6
(-0.8)
P 		24.5
(-3)
A 		92
(1.9)
P 		107.8
(3)
P 		83
avr 69.1
(-0.2) 		60.2
(-0.9) 		38.3
(-2.7) 		34.1
(-3) 		93
(1.7) 		110
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20970
Sequence Type Exemplar sequence
Representative Public ID CEK053H1R NCBI
Target Description CEK053H1R_rc /REP_DB=TREMBL Accession /GB=D64523 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065783 NCBI Caenorhabditis elegans D1044.6 (D1044.6) mRNA, complete cds. 11/11 None
D1044.6 ENSEMBL cdna:known chromosome:CEL140:III:5535629:5540736:-1 gene:D1044.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5535637-5535979(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1044.6
Entrez Gene 175762 Entrez gene
SwissProt P41954 EMBL-EBI
WormBase CE32173 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50738 Hypothetical protein D1044.6 [Caenorhabditis elegans] ref|NP_498184.2| D1044.6 [Caenorhabditis elegans] sp|P41954|YLK6_CAEEL Hypothetical protein D1044.6 in chromosome III 0.0
blast CAE56364 Hypothetical protein CBG24039 [Caenorhabditis briggsae] 1.0E-148
blast CAE56924 Hypothetical protein CBG24769 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
scop a.2.6.Effector domain of the protein kinase pkn/prk1 All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 0.560000002384186
scop a.2.6.Effector domain of the protein kinase pkn/prk1 All alpha proteins; Long alpha-hairpin; Effector domain of the protein kinase pkn/prk1; Effector domain of the protein kinase pkn/prk1 5.19999980926514
Sequence
Target Sequence 
>C. ELEGANS:174753_AT
ctagaagttttctggtgtttcaccgaaaatatttaattacaaaaaatttgtttctcaaaa
ttgacccccgattttctgttgttgatttgtaaaatttatagatttattcccaattttgat
cataatttatagccccaaccgatgctcttaaacccccaaccaacgacctcatatctaatt
caggtattttttccccaattgtttcatccatgtcactgcatttccgccactcccattgcc
ccctgaaccccactttcccctcatattgactggtgattttcattctttccatttgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGAAGTTTTCTGGTGTTTCACCG 410 223 17 Antisense
TTGTTTCTCAAAATTGACCCCCGAT 415 703 64 Antisense
TCAAAATTGACCCCCGATTTTCTGT 43 629 71 Antisense
AGATTTATTCCCAATTTTGATCATA 699 63 116 Antisense
TAATTTATAGCCCCAACCGATGCTC 463 635 139 Antisense
CCAACCAACGACCTCATATCTAATT 653 275 172 Antisense
CATATCTAATTCAGGTATTTTTTCC 432 213 186 Antisense
AATTGTTTCATCCATGTCACTGCAT 313 179 213 Antisense
CACTTTCCCCTCATATTGACTGGTG 685 195 267 Antisense
TTGACTGGTGATTTTCATTCTTTCC 340 705 282 Antisense
GATTTTCATTCTTTCCATTTGTTTT 420 429 291 Antisense
Sequence Source Affymetrix Proprietary Database