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[174752_at]

Description CEK014G9R_rc /REP_DB=TREMBL Accession /GB=D27593 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 43      4grp_high_8_8 > 48      6grp_highest_nonorm > 90      6grp_total > 64      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 308.7
(3)
P 		131.9
(-2.2)
P 		104.6
(-3)
P 		116.4
(-2.7)
P 		204
B 133.5
(3)
P 		72.2
(-3)
P 		84.4
(-1.8)
P 		97.3
(-0.5)
P 		61
C 164.8
(0.8)
P 		98.2
(-3)
P 		204.6
(3)
P 		109.7
(-2.4)
P 		106
avr 202.3
(3) 		100.8
(-3) 		131.2
(-1.2) 		107.8
(-2.6) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 124.1
(-1.2)
P 		94.7
(-3)
P 		140.1
(-0.1)
P 		190.2
(3)
P 		107.8
(-2.2)
P 		157.5
(0.9)
P 		96
B 119.9
(-0.9)
P 		118.9
(-1)
P 		122.3
(-0.7)
P 		97.3
(-3)
P 		163.4
(3)
P 		159.7
(2.7)
P 		66
C 118.7
(-2.2)
P 		92.6
(-3)
P 		279.5
(3)
P 		139.6
(-1.5)
P 		110.4
(-2.4)
P 		216.9
(1)
P 		187
avr 120.9
(-1.6) 		102.1
(-3) 		180.6
(3) 		142.4
(0.1) 		127.2
(-1.1) 		178
(2.8) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 112.4
(3)
P 		28.6
(-2.3)
P 		27.4
(-2.3)
P 		17
(-3)
P 		95
B 42.6
(3)
P 		17.8
(-3)
P 		19.6
(-2.6)
P 		20.7
(-2.3)
P 		25
C 54.5
(1.1)
P 		28.2
(-1.9)
P 		71.3
(3)
P 		18.5
(-3)
P 		53
avr 69.8
(3) 		24.9
(-2.3) 		39.4
(-0.6) 		18.7
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 22.9
(-3)
P 		33.7
(-0.4)
P 		30.5
(-1.2)
P 		48.2
(3)
P 		32.5
(-0.7)
P 		38.4
(0.7)
P 		25
B 41.7
(-0.7)
P 		39.6
(-1)
P 		29.7
(-2.4)
P 		25.8
(-3)
P 		66.4
(3)
P 		59.5
(2)
P 		41
C 44
(-0.9)
P 		28.2
(-3)
P 		71.1
(2.8)
P 		28.1
(-3)
P 		35.7
(-2)
P 		72.6
(3)
P 		45
avr 36.2
(-2.4) 		33.8
(-3) 		43.8
(-0.4) 		34
(-2.9) 		44.9
(-0.1) 		56.8
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21245
Sequence Type Exemplar sequence
Representative Public ID CEK014G9R NCBI
Target Description CEK014G9R_rc /REP_DB=TREMBL Accession /GB=D27593 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065062 NCBI Caenorhabditis elegans Y39A3CL.1 (Y39A3CL.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000025426 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1844218:1846622:1 10/11 None
SNAP00000025425 ENSEMBL cdna:SNAP chromosome:CEL140:III:1844362:1846614:1 10/11 None
Y39A3CL.1.1 ENSEMBL cdna:known chromosome:CEL140:III:1834500:1846740:1 gene:Y39A3CL.1 11/11 None
Y39A3CL.1.2 ENSEMBL cdna:known chromosome:CEL140:III:1834502:1846740:1 gene:Y39A3CL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1846377-1846729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CL.1
Entrez Gene 175329 Entrez gene
SwissProt Q9N412 EMBL-EBI
WormBase CE32963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK93862 Hypothetical protein Y39A3CL.1 [Caenorhabditis elegans] ref|NP_497463.2| Y39A3CL.1 [Caenorhabditis elegans] 0.0
blast CAE69109 Hypothetical protein CBG15135 [Caenorhabditis briggsae] 1.0E-136
blast AAK93862 Hypothetical protein Y39A3CL.1 [Caenorhabditis elegans] ref|NP_497463.2| Y39A3CL.1 [Caenorhabditis elegans] 2.0E-58
blast AAK93862 Hypothetical protein Y39A3CL.1 [Caenorhabditis elegans] ref|NP_497463.2| Y39A3CL.1 [Caenorhabditis elegans] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:174752_AT
ggaggatagcctcaattgggcaagaaatccgtcgaaaactattaaattggaaatcgatga
gcacttggatcgatgtgatacgtgtactaatcgagatttgaacccgaactgctattttcc
ggaatacttatcacatgcgctccgtcagaagccggaaattgttgaaatcttctcgcctgg
gatgctctcaatcatcacttgccgcagatttggcggcggcggcggtgtttaaaaaagaat
tttttttttttgacgggaacaactgatttttttgtgttatttcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATAGCCTCAATTGGGCAAGA 201 517 26 Antisense
TTGGAAATCGATGAGCACTTGGATC 586 679 72 Antisense
GGATCGATGTGATACGTGTACTAAT 477 501 92 Antisense
GAGATTTGAACCCGAACTGCTATTT 660 395 118 Antisense
CGAACTGCTATTTTCCGGAATACTT 515 251 130 Antisense
TCCGGAATACTTATCACATGCGCTC 284 595 143 Antisense
AATTGTTGAAATCTTCTCGCCTGGG 498 173 182 Antisense
CGCCTGGGATGCTCTCAATCATCAC 11 257 199 Antisense
TGGGATGCTCTCAATCATCACTTGC 89 555 203 Antisense
TTGCCGCAGATTTGGCGGCGGCGGC 262 697 224 Antisense
ACTGATTTTTTTGTGTTATTTCGTG 220 97 287 Antisense
Sequence Source Affymetrix Proprietary Database