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[174751_at]

Description CEK033G9R_rc /REP_DB=TREMBL Accession /GB=D33630 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 67      6grp_total > 49      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 856
1 2 3 4 range
A 2085.6
(3)
P 		1807.6
(0.7)
P 		1571.3
(-1.3)
P 		1372.4
(-3)
P 		713
B 2090.8
(3)
P 		1398.3
(-1.9)
P 		1540.1
(-0.9)
P 		1234.6
(-3)
P 		856
C 1991.6
(3)
P 		1677.5
(0.1)
P 		1333.3
(-3)
P 		1452.6
(-1.9)
P 		658
avr 2056
(3) 		1627.8
(-0.7) 		1481.6
(-1.9) 		1353.2
(-3) 		703

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1054
1 2 3 4 5 6 range
A 2098.7
(3)
P 		1707.1
(0.8)
P 		1044.9
(-3)
P 		1441.9
(-0.7)
P 		1695.7
(0.7)
P 		2069.6
(2.8)
P 		1054
B 2037.6
(3)
P 		1348.3
(-1.4)
P 		1092.2
(-3)
P 		1936.4
(2.4)
P 		1458.2
(-0.7)
P 		1605.9
(0.3)
P 		945
C 2016.4
(3)
P 		1189.9
(-3)
P 		1591.4
(-0.1)
P 		1637.5
(0.2)
P 		1820.4
(1.6)
P 		1795.3
(1.4)
P 		827
avr 2050.9
(3) 		1415.1
(-1.7) 		1242.8
(-3) 		1671.9
(0.2) 		1658.1
(0.1) 		1823.6
(1.3) 		808
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 559
1 2 3 4 range
A 759.4
(3)
P 		392.4
(-0.9)
P 		410.8
(-0.7)
P 		200.9
(-3)
P 		559
B 666.7
(3)
P 		345.4
(-1.8)
P 		356.9
(-1.6)
P 		263.1
(-3)
P 		404
C 659.3
(3)
P 		482.3
(0.4)
P 		464.7
(0.2)
P 		244.9
(-3)
P 		414
avr 695.1
(3) 		406.7
(-0.8) 		410.8
(-0.7) 		236.3
(-3) 		459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 386.9
(-0.5)
P 		607.1
(3)
P 		227.5
(-3)
P 		365.7
(-0.8)
P 		511.7
(1.5)
P 		503.9
(1.4)
P 		380
B 709
(3)
P 		448.8
(-0.5)
P 		265.2
(-3)
P 		512.9
(0.3)
P 		592.5
(1.4)
P 		598.8
(1.5)
P 		444
C 747.4
(3)
P 		363.1
(-2.5)
P 		405
(-1.9)
P 		329.3
(-3)
P 		589
(0.7)
P 		601
(0.9)
P 		418
avr 614.4
(3) 		473
(0.3) 		299.2
(-3) 		402.6
(-1) 		564.4
(2) 		567.9
(2.1) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21076
Sequence Type Exemplar sequence
Representative Public ID CEK033G9R NCBI
Target Description CEK033G9R_rc /REP_DB=TREMBL Accession /GB=D33630 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066167 NCBI Caenorhabditis elegans F37C12.7 (F37C12.7) mRNA, complete cds. 11/11 None
F37C12.7 ENSEMBL cdna:known chromosome:CEL140:III:7167762:7170910:1 gene:F37C12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7170303-7170897(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C12.7
Entrez Gene 176005 Entrez gene
SwissProt Q20121 EMBL-EBI
WormBase CE29312 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259761_AT long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS9) at
CANINE:1588639_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE:1584607_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE_2:CFA.14057.1.A1_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE_2:CFA.14057.1.A1_S_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE_2:CFA.1897.1.A1_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE_2:CFAAFFX.10013.1.S1_S_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
CANINE_2:CFAAFFX.24825.1.S1_S_AT similar to acyl-CoA synthetase long-chain family member 3 cfa
DROSOPHILA_2:1629961_S_AT dm
DROSGENOME1:141390_AT dm
CHICKEN:GGAAFFX.3253.1.S1_S_AT similar to Long-chain-fatty-acid--CoA ligase 3 (Long-chain acyl-CoA synthetase 3) (LACS 3) gga
HG-U133A:201661_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U133_PLUS_2:201661_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U133A_2:201661_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-FOCUS:201661_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U133_PLUS_2:201662_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U133A:201662_S_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U133A_2:201662_S_AT acyl-CoA synthetase long-chain family member 3 hs
HU35KSUBA:N44998_AT acyl-CoA synthetase long-chain family member 3 hs
HU35KSUBA:AA316272_AT acyl-CoA synthetase long-chain family member 3 hs
HU35KSUBB:RC_R63734_AT acyl-CoA synthetase long-chain family member 3 hs
U133_X3P:G4165017_3P_A_AT acyl-CoA synthetase long-chain family member 3 hs
U133_X3P:G12669907_3P_A_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U95AV2:33880_AT acyl-CoA synthetase long-chain family member 3 hs
HG-U95AV2:33881_AT Acyl-CoA synthetase long-chain family member 3 hs
HU35KSUBA:RC_AA236553_AT Acyl-CoA synthetase long-chain family member 3 hs
U133_X3P:HS.268012.0.S3_3P_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133A_2:201660_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133_PLUS_2:201660_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133A:201660_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133_PLUS_2:236168_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133B:236168_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133_PLUS_2:242726_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U133B:242726_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U95C:50846_AT Acyl-CoA synthetase long-chain family member 3 hs
HG-U95E:86030_AT Acyl-CoA synthetase long-chain family member 3 hs
HU35KSUBD:RC_AA428633_AT Acyl-CoA synthetase long-chain family member 3 hs
U133_X3P:HS.122365.0.A1_3P_AT Acyl-CoA synthetase long-chain family member 3 hs
U133_X3P:HS.193385.0.A1_3P_AT Acyl-CoA synthetase long-chain family member 3 hs
MG-U74BV2:108041_AT acyl-CoA synthetase long-chain family member 3 mm
MG-U74BV2:165246_R_AT acyl-CoA synthetase long-chain family member 3 mm
MOE430B:1452771_S_AT acyl-CoA synthetase long-chain family member 3 mm
MOUSE430_2:1452771_S_AT acyl-CoA synthetase long-chain family member 3 mm
MOE430B:1428386_AT acyl-CoA synthetase long-chain family member 3 mm
MOUSE430_2:1428386_AT acyl-CoA synthetase long-chain family member 3 mm
MOE430B:1428387_AT acyl-CoA synthetase long-chain family member 3 mm
MOUSE430_2:1428387_AT acyl-CoA synthetase long-chain family member 3 mm
RN-U34:D30666_AT acyl-CoA synthetase long-chain family member 3 rn
RG-U34A:D30666_AT acyl-CoA synthetase long-chain family member 3 rn
RAE230A:1368177_AT acyl-CoA synthetase long-chain family member 3 rn
RAT230_2:1368177_AT acyl-CoA synthetase long-chain family member 3 rn
RG-U34A:RC_AA900989_AT Acyl-CoA synthetase long-chain family member 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48292 Hypothetical protein F37C12.7 [Caenorhabditis elegans] ref|NP_498568.1| F37C12.7 [Caenorhabditis elegans] 0.0
blast CAE63810 Hypothetical protein CBG08359 [Caenorhabditis briggsae] 0.0
blast NP_508993 fatty Acid CoA Synthetase family member (acs-17) [Caenorhabditis elegans] gb|AAA80409.2| Fatty acid coa synthetase family protein 17 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.4E-41
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.9E-42
Sequence
Target Sequence 
>C. ELEGANS:174751_AT
tttcacactggtaacttgctcttccccacctattcgagatactcgatattggattcccat
ctcttttgtatacttccctcatttatagcagcataatctgttagctttcataccggaagc
tttaggtttcattcctattctgtaaagattcgtgtttcatgctactctttcccgtattct
ccttccctttccaccatcaaagagcttttctaacttgtttttcacacatcgtacctattc
gtaacttattctttctagagcccctgattccttttccccaaacatccaaacgctttatat
tttggtcgcccctgaaaattaggtagattgttttcaaaaatgaaaatgctgacaacattt
ttgtttttcaatgaaatccatcgagatttcaagggtgttaagatagattttcaattttta
caaattcattcgatcaatagtttgtttttgccaaatgggttgttcctttcacaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCACACTGGTAACTTGCTCTTCC 655 671 25 Antisense
TTCCCCACCTATTCGAGATACTCGA 195 697 46 Antisense
ATTGGATTCCCATCTCTTTTGTATA 260 3 72 Antisense
ATACTTCCCTCATTTATAGCAGCAT 144 25 94 Antisense
TAATCTGTTAGCTTTCATACCGGAA 37 637 118 Antisense
AGATTCGTGTTTCATGCTACTCTTT 105 65 170 Antisense
TTCCCTTTCCACCATCAAAGAGCTT 156 699 207 Antisense
GTTTTTCACACATCGTACCTATTCG 288 449 241 Antisense
GTAACTTATTCTTTCTAGAGCCCCT 698 461 265 Antisense
TCCCCAAACATCCAAACGCTTTATA 202 597 299 Antisense
CAAATGGGTTGTTCCTTTCACACCG 362 193 476 Antisense
Sequence Source Affymetrix Proprietary Database