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[174749_s_at]

Description CEK078B2R_rc /REP_DB=TREMBL Accession /GB=D71560 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78b2 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 198.4
(-3)
A 		221.4
(-2.5)
A 		214.3
(-2.7)
A 		496.1
(3)
P 		298
B 158.9
(-3)
M 		223.2
(2.4)
P 		211.8
(1.4)
A 		230.7
(3)
P 		72
C 179.4
(-3)
A 		264.1
(-0.8)
P 		185.3
(-2.8)
A 		411.7
(3)
P 		232
avr 178.9
(-3) 		236.2
(-1.3) 		203.8
(-2.3) 		379.5
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1178
1 2 3 4 5 6 range
A 202.9
(-2.9)
A 		199.6
(-2.9)
A 		187.5
(-3)
A 		188.1
(-3)
A 		786.4
(0.3)
P 		1288.5
(3)
P 		1101
B 150.9
(-2.8)
A 		224.9
(-2.4)
M 		111
(-3)
A 		138.6
(-2.8)
M 		829
(1)
P 		1192.4
(3)
P 		1081
C 131.7
(-3)
A 		150.4
(-2.9)
P 		220.2
(-2.5)
P 		196.8
(-2.6)
A 		798.1
(0.7)
P 		1207.2
(3)
P 		1076
avr 161.8
(-3) 		191.6
(-2.8) 		172.9
(-2.9) 		174.5
(-2.9) 		804.5
(0.6) 		1229.4
(3) 		1068
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 72.2
(2.9)
A 		48.1
(-3)
A 		56
(-1.1)
A 		72.6
(3)
P 		25
B 50.7
(-1.4)
M 		55.1
(3)
P 		49.1
(-3)
A 		49.2
(-2.9)
P 		6
C 59.4
(-3)
A 		75.9
(3)
P 		64.6
(-1.1)
A 		69.4
(0.6)
P 		17
avr 60.8
(0.5) 		59.7
(-0.4) 		56.6
(-3) 		63.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 37.4
(-3)
A 		71
(-2.3)
A 		40.8
(-2.9)
A 		47.7
(-2.8)
A 		237.3
(1.3)
P 		313.7
(3)
P 		276
B 52.5
(-2.6)
A 		74.9
(-2.3)
M 		26.9
(-3)
A 		36.7
(-2.9)
M 		336.8
(1.5)
P 		444.6
(3)
P 		418
C 48.8
(-2.8)
A 		45.9
(-2.9)
P 		56.1
(-2.7)
P 		39.6
(-3)
A 		258.3
(0.6)
P 		404.1
(3)
P 		365
avr 46.2
(-2.9) 		63.9
(-2.6) 		41.3
(-3) 		41.3
(-3) 		277.5
(1.1) 		387.5
(3) 		346
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174749_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21242
Sequence Type Exemplar sequence
Representative Public ID CEK078B2R NCBI
Target Description CEK078B2R_rc /REP_DB=TREMBL Accession /GB=D71560 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk78b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064919 NCBI Caenorhabditis elegans Y46E12BL.3 (Y46E12BL.3) mRNA, complete cds. 11/11 None
SNAP00000018037 ENSEMBL cdna:SNAP chromosome:CEL140:II:15230355:15232515:1 11/11 None
GENEFINDER00000018040 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15230394:15232515:1 11/11 None
Y46E12BL.3 ENSEMBL cdna:known chromosome:CEL140:II:15230277:15232675:1 gene:Y46E12BL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15232054-15232662(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46E12BL.3
Entrez Gene 266877 Entrez gene
SwissProt Q965N7 EMBL-EBI
WormBase CE27473 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68490 Hypothetical protein Y46E12BL.3 [Caenorhabditis elegans] ref|NP_497320.1| Y46E12BL.3 [Caenorhabditis elegans] 1.0E-107
blast AAK68491 Hypothetical protein Y46E12BL.4 [Caenorhabditis elegans] ref|NP_497321.1| Y46E12BL.4 [Caenorhabditis elegans] 3.0E-80
blast AAK68491 Hypothetical protein Y46E12BL.4 [Caenorhabditis elegans] ref|NP_497321.1| Y46E12BL.4 [Caenorhabditis elegans] 3.0E-75
blast CAE73242 Hypothetical protein CBG20654 [Caenorhabditis briggsae] 4.0E-74
blast CAE73242 Hypothetical protein CBG20654 [Caenorhabditis briggsae] 3.0E-69
blast AAK68491 Hypothetical protein Y46E12BL.4 [Caenorhabditis elegans] ref|NP_497321.1| Y46E12BL.4 [Caenorhabditis elegans] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.1E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.1E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.1E-15
Sequence
Target Sequence 
>C. ELEGANS:174749_S_AT
cagtcgagatgctaccgttgttcgaactgtgtcgacgtcgtttccgaagcataatgggac
cagaccccgacaaacgcatcaagccgctgatgatcccgccggttatgaaggaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCGAGATGCTACCGTTGTTCGA 141 207 40 Antisense
GATGCTACCGTTGTTCGAACTGTGT 224 407 47 Antisense
TGCTACCGTTGTTCGAACTGTGTCG 626 575 49 Antisense
ACCGTTGTTCGAACTGTGTCGACGT 244 85 53 Antisense
TGTGTCGACGTCGTTTCCGAAGCAT 15 555 67 Antisense
GAAGCATAATGGGACCAGACCCCGA 515 341 85 Antisense
CATAATGGGACCAGACCCCGACAAA 591 71 89 Antisense
CGACAAACGCATCAAGCCGCTGATG 107 253 107 Antisense
CGCATCAAGCCGCTGATGATCCCGC 324 255 114 Antisense
GCTGATGATCCCGCCGGTTATGAAG 170 297 125 Antisense
GATCCCGCCGGTTATGAAGGAATAT 22 417 131 Antisense
Sequence Source Affymetrix Proprietary Database