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[174748_at]

Description CEK043C7R_rc /REP_DB=TREMBL Accession /GB=D34251 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 46      6grp_total > 01      4grp_total > 18      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2016
1 2 3 4 range
A 3225.5
(0.4)
P 		3326.2
(1.4)
P 		3495.9
(3)
P 		2862.9
(-3)
P 		633
B 3264.3
(-1.3)
P 		3569.8
(-0.2)
P 		2802.8
(-3)
P 		4462.3
(3)
P 		1660
C 2446.7
(-3)
P 		2882
(-0.4)
P 		2907.6
(-0.2)
P 		3446.8
(3)
P 		1000
avr 2978.8
(-3) 		3259.3
(-0.2) 		3068.8
(-2.1) 		3590.7
(3) 		612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2363
1 2 3 4 5 6 range
A 2996.6
(-0.5)
P 		3754.8
(3)
P 		2456.9
(-3)
P 		2803.4
(-1.4)
P 		3651
(2.5)
P 		3509.2
(1.9)
P 		1298
B 2564.5
(-1.1)
P 		3996.3
(3)
P 		1901.5
(-3)
P 		3180.7
(0.7)
P 		2279.3
(-1.9)
P 		2576.7
(-1.1)
P 		2095
C 3116.6
(-1)
P 		3091.2
(-1.1)
P 		4264.8
(3)
P 		3159
(-0.8)
P 		2899.9
(-1.7)
P 		2530.9
(-3)
P 		1734
avr 2892.6
(-2.8) 		3614.1
(3) 		2874.4
(-3) 		3047.7
(-1.6) 		2943.4
(-2.4) 		2872.3
(-3) 		742
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 1174.4
(3)
P 		722
(-0.6)
P 		913.9
(0.9)
P 		419.1
(-3)
P 		755
B 1041
(3)
P 		881.7
(0.6)
P 		649.5
(-3)
P 		950.9
(1.6)
P 		392
C 809.9
(0.2)
P 		828.6
(0.4)
P 		1013.4
(3)
P 		581.2
(-3)
P 		432
avr 1008.4
(3) 		810.8
(-0.3) 		858.9
(0.5) 		650.4
(-3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 874
1 2 3 4 5 6 range
A 552.4
(-2.9)
P 		1335.4
(3)
P 		535.1
(-3)
P 		711
(-1.7)
P 		1101.7
(1.2)
P 		854.4
(-0.6)
P 		800
B 892.3
(-0)
P 		1330.2
(3)
P 		461.7
(-3)
P 		842.5
(-0.4)
P 		926.1
(0.2)
P 		960.8
(0.4)
P 		869
C 1155.2
(3)
P 		943.2
(0.6)
P 		1085.5
(2.2)
P 		635.3
(-3)
P 		938.4
(0.5)
P 		847.2
(-0.6)
P 		520
avr 866.6
(-1) 		1202.9
(3) 		694.1
(-3) 		729.6
(-2.6) 		988.7
(0.5) 		887.5
(-0.7) 		509
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20474
Sequence Type Exemplar sequence
Representative Public ID CEK043C7R NCBI
Target Description CEK043C7R_rc /REP_DB=TREMBL Accession /GB=D34251 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063997(11), NM_182244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063997 NCBI Caenorhabditis elegans T06D8.1a (T06D8.1) mRNA, complete cds. 11/11 None
NM_182244 NCBI Caenorhabditis elegans T06D8.1b (T06D8.1) mRNA, complete cds. 11/11 None
T06D8.1a ENSEMBL cdna:known chromosome:CEL140:II:11213620:11220536:1 gene:T06D8.1 11/11 A 
T06D8.1b ENSEMBL cdna:known chromosome:CEL140:II:11213620:11220529:1 gene:T06D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11220143-11220523(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88964 Hypothetical protein T06D8.1a [Caenorhabditis elegans] ref|NP_496398.1| T06D8.1a [Caenorhabditis elegans] 0.0
blast CAD59157 Hypothetical protein T06D8.1b [Caenorhabditis elegans] ref|NP_872044.1| T06D8.1b [Caenorhabditis elegans] 0.0
blast CAE59552 Hypothetical protein CBG02948 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.7E-6
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 6.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.8E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 1.2E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.5E-20
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.3E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 5.4E-19
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 9.9E-17
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 2.0E-16
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 8.3E-12
Pfam IPR009557 EMBL-EBI Protein of unknown function DUF1174 3.5E-21
Sequence
Target Sequence 
>C. ELEGANS:174748_AT
tattagtgtaactccatatcttttaatattccgctccaattgctcataatgtttgttctt
taaaaattaactttttccttatgtaaaccctgccgtttttcctgctgaaacgtgtagaat
ttcgctagtatgcccccgtaatatttataattaacccatcttcccgtggcccatgtctac
cggtgtccatgaacgttgcctttgttttctccgatgatcacttcttctcagctggtttct
ttttttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTAGTGTAACTCCATATCTTTTA 369 663 97 Antisense
TATCTTTTAATATTCCGCTCCAATT 292 659 113 Antisense
TCCGCTCCAATTGCTCATAATGTTT 186 597 126 Antisense
CTGCCGTTTTTCCTGCTGAAACGTG 102 237 186 Antisense
TGTAGAATTTCGCTAGTATGCCCCC 271 559 209 Antisense
GTATGCCCCCGTAATATTTATAATT 531 455 224 Antisense
TTTATAATTAACCCATCTTCCCGTG 535 673 240 Antisense
GTCTACCGGTGTCCATGAACGTTGC 706 467 271 Antisense
CATGAACGTTGCCTTTGTTTTCTCC 117 207 284 Antisense
TTGTTTTCTCCGATGATCACTTCTT 448 705 298 Antisense
TTCTCAGCTGGTTTCTTTTTTTCTT 468 691 321 Antisense
Sequence Source Affymetrix Proprietary Database