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[174747_s_at]

Description CEK056G7R_rc /REP_DB=TREMBL Accession /GB=D65452 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk56g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 43      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 66      6grp_total > 20      4grp_total > 51      6grp_highest_sub > 03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1288
1 2 3 4 range
A 1132.7
(-1.6)
P 		2057.4
(3)
P 		1347.3
(-0.5)
P 		847.3
(-3)
P 		1210
B 1258.3
(0.8)
P 		1533.8
(3)
P 		1401.9
(2)
P 		769.8
(-3)
P 		764
C 1156.6
(-3)
P 		1266.7
(-0.5)
P 		1424.1
(3)
P 		1233
(-1.3)
P 		268
avr 1182.5
(-0.9) 		1619.3
(3) 		1391.1
(1) 		950
(-3) 		669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1425
1 2 3 4 5 6 range
A 1354.7
(0.4)
P 		1016.9
(-1.4)
P 		1821
(2.9)
P 		1833.5
(3)
P 		713.2
(-3)
P 		1508.6
(1.3)
P 		1120
B 1056.2
(-3)
P 		1793
(1.1)
P 		1190.5
(-2.3)
P 		1251.3
(-1.9)
P 		2137.8
(3)
P 		1350.8
(-1.4)
P 		1082
C 1227.4
(-1.8)
P 		1653.9
(3)
P 		1305.4
(-1)
P 		1198.1
(-2.2)
P 		1154
(-2.7)
P 		1125.9
(-3)
P 		528
avr 1212.8
(-3) 		1487.9
(3) 		1439
(1.9) 		1427.6
(1.7) 		1335
(-0.3) 		1328.4
(-0.5) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 412.4
(2.4)
P 		446.6
(3)
P 		352.2
(1.2)
P 		124
(-3)
P 		323
B 401.3
(3)
P 		378.8
(2.4)
P 		324.9
(1.1)
P 		164
(-3)
P 		237
C 382.9
(0.6)
P 		364.2
(0.3)
P 		496.3
(3)
P 		207.9
(-3)
P 		288
avr 398.9
(3) 		396.5
(2.9) 		391.1
(2.8) 		165.3
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 653
1 2 3 4 5 6 range
A 249.7
(-2.2)
P 		361.7
(0.5)
P 		396.6
(1.4)
P 		465
(3)
P 		215.2
(-3)
P 		367.3
(0.7)
P 		250
B 367.5
(-2.2)
P 		596.8
(0.2)
P 		289.1
(-3)
P 		331.4
(-2.6)
P 		868.6
(3)
P 		503.7
(-0.8)
P 		580
C 454.9
(1.9)
P 		504.7
(3)
P 		332.2
(-0.9)
P 		240.9
(-3)
P 		373.4
(0)
P 		376.9
(0.1)
P 		264
avr 357.4
(-2.3) 		487.7
(3) 		339.3
(-3) 		345.8
(-2.7) 		485.7
(2.9) 		416
(0.1) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174747_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20050
Sequence Type Exemplar sequence
Representative Public ID CEK056G7R NCBI
Target Description CEK056G7R_rc /REP_DB=TREMBL Accession /GB=D65452 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk56g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058407 NCBI Caenorhabditis elegans Y34D9A.1 (Y34D9A.1) mRNA, complete cds. 11/11 None
SNAP00000009164 ENSEMBL cdna:SNAP chromosome:CEL140:I:1019921:1052164:-1 11/11 None
Y34D9A.1 ENSEMBL cdna:known chromosome:CEL140:I:1019886:1029912:-1 gene:Y34D9A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009200 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009202 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1019856-1024023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34D9A.1
Entrez Gene 171682 Entrez gene
SwissProt Q9BL86 EMBL-EBI
WormBase CE27249 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584188_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFA.14861.1.A1_S_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFA.18802.1.S1_S_AT similar to mitochondrial ribosomal protein L38 cfa
CANINE_2:CFAAFFX.8360.1.S1_AT similar to mitochondrial ribosomal protein L38 cfa
DROSOPHILA_2:1638073_AT mitochondrial ribosomal protein L38 dm
DROSGENOME1:145056_AT mitochondrial ribosomal protein L38 dm
HU35KSUBA:RC_AA456612_AT mitochondrial ribosomal protein L38 hs
HU35KSUBD:RC_AA620552_R_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS2.436579.1.S1_3P_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS2.380465.1.S2_3P_S_AT mitochondrial ribosomal protein L38 hs
U133_X3P:HS.25682.0.S1_3P_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:1561508_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:225103_AT mitochondrial ribosomal protein L38 hs
HG-U133B:225103_AT mitochondrial ribosomal protein L38 hs
HG-U95C:65833_AT mitochondrial ribosomal protein L38 hs
HG-U95C:65834_AT mitochondrial ribosomal protein L38 hs
HG-U95D:71188_AT mitochondrial ribosomal protein L38 hs
HG-U133_PLUS_2:230726_AT Mitochondrial ribosomal protein L38 hs
HG-U133B:230726_AT Mitochondrial ribosomal protein L38 hs
U133_X3P:HS.25682.1.A1_3P_AT Mitochondrial ribosomal protein L38 hs
MOUSE430A_2:1447961_S_AT mitochondrial ribosomal protein L38 mm
MOE430A:1447961_S_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1447961_S_AT mitochondrial ribosomal protein L38 mm
MG-U74AV2:96335_AT mitochondrial ribosomal protein L38 mm
MG-U74CV2:170959_R_AT mitochondrial ribosomal protein L38 mm
MOE430A:1430610_AT mitochondrial ribosomal protein L38 mm
MOUSE430A_2:1430610_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1430610_AT mitochondrial ribosomal protein L38 mm
MOE430B:1444217_AT mitochondrial ribosomal protein L38 mm
MOUSE430_2:1444217_AT mitochondrial ribosomal protein L38 mm
MU19KSUBB:TC34547_AT Mitochondrial ribosomal protein L38, mRNA (cDNA clone MGC:41062 IMAGE:1493919) mm
RG-U34A:RC_AA891689_G_AT mitochondrial ribosomal protein L38 (predicted) rn
RG-U34A:RC_AA891689_AT mitochondrial ribosomal protein L38 (predicted) rn
RAE230A:1383618_AT mitochondrial ribosomal protein L38 (predicted) rn
RAT230_2:1383618_AT mitochondrial ribosomal protein L38 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_490808 Y34D9A.1 [Caenorhabditis elegans] gb|AAK29884.1| Hypothetical protein Y34D9A.1 [Caenorhabditis elegans] 0.0
blast CAE74320 Hypothetical protein CBG22031 [Caenorhabditis briggsae] 0.0
blast AAV68307 SPD-1 [Caenorhabditis elegans] ref|NP_490809.2| SPindle Defective family member (spd-1) [Caenorhabditis elegans] gb|AAT81176.1| Spindle defective protein 1 [Caenorhabditis elegans] 0.0
blast EAA06842 ENSANGP00000019033 [Anopheles gambiae str. PEST] ref|XP_311178.2| ENSANGP00000019033 [Anopheles gambiae str. PEST] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007145 EMBL-EBI MAP65/ASE1 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009164 1 67-89
Sequence
Target Sequence 
>C. ELEGANS:174747_S_AT
tttcccgaaaaaccgcagccattcgatttgtatttggatatgtatcgagatccgaaagaa
gtcgagcaagagatgcttgaaaaaagattggcagaagtgaaattggattatgttaaggat
gggtggacactgactacgtggagaacaagaagaagctgccggcttggcttcatgccaaga
agctggaacgtgacggagtcggccacgccaagtatcataatgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCGAAAAACCGCAGCCATTCG 145 669 15 Antisense
AACCGCAGCCATTCGATTTGTATTT 338 147 25 Antisense
GAGATCCGAAAGAAGTCGAGCAAGA 210 395 61 Antisense
ATGGGTGGACACTGACTACGTGGAG 668 31 133 Antisense
GGACACTGACTACGTGGAGAACAAG 617 525 139 Antisense
GAAGAAGCTGCCGGCTTGGCTTCAT 143 341 163 Antisense
CTGCCGGCTTGGCTTCATGCCAAGA 639 235 170 Antisense
TCATGCCAAGAAGCTGGAACGTGAC 86 621 184 Antisense
TGGAACGTGACGGAGTCGGCCACGC 2 547 198 Antisense
GAGTCGGCCACGCCAAGTATCATAA 154 399 210 Antisense
GGCCACGCCAAGTATCATAATGATT 477 543 215 Antisense
Sequence Source Affymetrix Proprietary Database