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[174745_at] hnRNP F protein like

Description CEK082B3R_rc /REP_DB=TREMBL Accession /GB=D71817 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 55      6grp_total > 90      4grp_total > 58      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1971
1 2 3 4 range
A 563.2
(-2)
P 		1219.4
(1.1)
P 		1635.5
(3)
P 		347
(-3)
P 		1289
B 886.2
(-1.8)
P 		1936
(1.9)
P 		2229.5
(3)
P 		557.4
(-3)
P 		1672
C 992.1
(-0.7)
P 		2150.7
(3)
P 		1701.5
(1.6)
P 		258.6
(-3)
P 		1892
avr 813.8
(-1.3) 		1768.7
(2.6) 		1855.5
(3) 		387.7
(-3) 		1468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2658
1 2 3 4 5 6 range
A 1849.2
(-0.6)
P 		1713.9
(-1.1)
P 		1124.2
(-3)
P 		2974.5
(3)
P 		1543.2
(-1.6)
P 		1148.5
(-2.9)
P 		1850
B 1531.7
(-0.9)
P 		1205.7
(-1.6)
P 		833.8
(-2.5)
P 		3255.8
(3)
P 		1721.3
(-0.5)
P 		598
(-3)
P 		2658
C 1953.2
(0.9)
P 		1365.2
(-0.9)
P 		2655.1
(3)
P 		1096.6
(-1.7)
P 		2039.2
(1.1)
P 		669.9
(-3)
P 		1985
avr 1778
(0.6) 		1428.3
(-0.7) 		1537.7
(-0.3) 		2442.3
(3) 		1767.9
(0.5) 		805.5
(-3) 		1637
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 205.1
(-0.5)
P 		264.7
(0.4)
P 		427.6
(3)
P 		50.8
(-3)
P 		377
B 282.6
(-0.5)
P 		478.1
(2.4)
P 		516.6
(3)
P 		118.8
(-3)
P 		398
C 328.4
(-0)
P 		618.3
(3)
P 		593
(2.7)
P 		43.6
(-3)
P 		575
avr 272
(-0.3) 		453.7
(2.2) 		512.4
(3) 		71.1
(-3) 		441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 340.9
(-1.9)
P 		609.6
(1.3)
P 		244.8
(-3)
P 		754.4
(3)
P 		465.7
(-0.4)
P 		279.6
(-2.6)
P 		510
B 532.9
(0)
P 		401.3
(-1.2)
P 		202.5
(-3)
P 		862.3
(3)
P 		699.4
(1.5)
P 		223
(-2.8)
P 		660
C 724
(3)
P 		416.6
(-0.7)
P 		675.8
(2.4)
P 		220.5
(-3)
P 		659.9
(2.2)
P 		224.2
(-3)
P 		504
avr 532.6
(1.7) 		475.8
(0.8) 		374.4
(-0.9) 		612.4
(3) 		608.3
(2.9) 		242.3
(-3) 		370
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20594
Sequence Type Exemplar sequence
Representative Public ID CEK082B3R NCBI
Target Description CEK082B3R_rc /REP_DB=TREMBL Accession /GB=D71817 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk82b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063559 NCBI Caenorhabditis elegans ZK1067.6 (ZK1067.6) mRNA, complete cds. 11/11 None
ZK1067.6 ENSEMBL cdna:known chromosome:CEL140:II:9178424:9188391:-1 gene:ZK1067.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9178458-9178777(-) 100.0 100.0
Public Domain and Genome References
Gene Title hnRNP F protein like
Gene Symbol sym-2
Ensembl ZK1067.6
Entrez Gene 174461 Entrez gene
SwissProt Q22708 EMBL-EBI
WormBase CE35148 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14676.1.S1_AT similar to CG8205-PC, isoform C cfa
CANINE_2:CFAAFFX.14683.1.S1_S_AT similar to CG8205-PC, isoform C cfa
DROSOPHILA_2:1632840_S_AT fusilli dm
DROSGENOME1:151545_AT fusilli dm
DROSOPHILA_2:1630930_A_AT fusilli dm
DROSGENOME1:142370_AT fusilli dm
HG-U133_PLUS_2:219121_S_AT RNA binding motif protein 35A hs
HG-U133A:219121_S_AT RNA binding motif protein 35A hs
HG-U133A_2:219121_S_AT RNA binding motif protein 35A hs
HU35KSUBA:RC_AA372018_AT RNA binding motif protein 35A hs
U133_X3P:G8923166_3P_A_AT RNA binding motif protein 35A hs
U133_X3P:HS.24743.1.A1_3P_AT RNA binding motif protein 35A hs
HG-U133_PLUS_2:225846_AT RNA binding motif protein 35A hs
HG-U133B:225846_AT RNA binding motif protein 35A hs
HG-U95B:50391_AT RNA binding motif protein 35A hs
HG-U95D:82072_AT RNA binding motif protein 35A hs
HG-U95E:85874_AT RNA binding motif protein 35A hs
RG-U34B:RC_AA996813_AT similar to hypothetical protein FLJ20171 rn
RAE230B:1383496_AT similar to hypothetical protein FLJ20171 rn
RAT230_2:1383496_AT similar to hypothetical protein FLJ20171 rn
Protein Similarities
Method ID Description E-Value
blast AAO65265 putative RNA binding protein SYM-2 [Caenorhabditis elegans] emb|CAA93887.2| Hypothetical protein ZK1067.6 [Caenorhabditis elegans] emb|CAA92704.2| Hypothetical protein ZK1067.6 [Caenorhabditis elegans] ref|NP_495960.2| ZK1067.6 [Caenorhabditis elegans] 0.0
blast CAE57869 Hypothetical protein CBG00908 [Caenorhabditis briggsae] 0.0
blast XP_397080 PREDICTED: similar to GA20896-PA [Apis mellifera] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:174745_AT
tatcatttaatcatgttttcctaaatttttctcgttgaattcccgttcactcccatcata
gtattctgttatttcttgccctagagccctcattttttgtcgcataatttactgcgtctc
atcacttccaaacctgtctctctctctcactccaaccgtctctccacatccatccattca
tcttcacgttcgcaatttctgtgatttgaccaaaagttgactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCATTTAATCATGTTTTCCTAAA 587 659 29 Antisense
TCATGTTTTCCTAAATTTTTCTCGT 223 623 39 Antisense
CGTTCACTCCCATCATAGTATTCTG 43 247 72 Antisense
ATAGTATTCTGTTATTTCTTGCCCT 67 23 86 Antisense
TATTCTGTTATTTCTTGCCCTAGAG 381 663 90 Antisense
AGCCCTCATTTTTTGTCGCATAATT 342 83 113 Antisense
ATAATTTACTGCGTCTCATCACTTC 669 25 132 Antisense
TTCATCTTCACGTTCGCAATTTCTG 497 687 205 Antisense
TCTTCACGTTCGCAATTTCTGTGAT 303 617 209 Antisense
CAATTTCTGTGATTTGACCAAAAGT 425 175 221 Antisense
GTGATTTGACCAAAAGTTGACTCTT 673 481 229 Antisense
Sequence Source Affymetrix Proprietary Database