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[174741_at]

Description CEK018H2R_rc /REP_DB=TREMBL Accession /GB=D32570 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 570.4
(3)
P 		489.5
(0.6)
P 		383.3
(-2.4)
P 		364.1
(-3)
P 		206
B 607.7
(3)
P 		580
(2.5)
P 		273.1
(-3)
P 		558.1
(2.1)
P 		335
C 667.3
(3)
P 		492.3
(-0.7)
P 		381.1
(-3)
P 		486.1
(-0.8)
P 		286
avr 615.1
(3) 		520.6
(0.9) 		345.8
(-3) 		469.4
(-0.2) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 1152.3
(3)
P 		708.1
(-0)
P 		435.6
(-1.8)
P 		265.5
(-3)
P 		498.9
(-1.4)
P 		310.7
(-2.7)
P 		887
B 1125.8
(3)
P 		895.6
(1.3)
P 		444.9
(-2.1)
P 		517.9
(-1.6)
P 		327.3
(-3)
P 		377.5
(-2.6)
P 		799
C 687.7
(1.1)
P 		853.5
(3)
P 		434.1
(-1.8)
P 		378.1
(-2.5)
P 		330.6
(-3)
P 		397.5
(-2.2)
P 		523
avr 988.6
(3) 		819.1
(1.4) 		438.2
(-2.3) 		387.2
(-2.8) 		385.6
(-2.8) 		361.9
(-3) 		627
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 207.7
(3)
P 		106.3
(-0.9)
P 		100.2
(-1.2)
P 		53.3
(-3)
P 		154
B 193.8
(3)
P 		143.3
(0.7)
P 		63.3
(-3)
P 		118.9
(-0.4)
P 		131
C 220.9
(3)
P 		141.5
(-0.4)
P 		132.8
(-0.8)
P 		82
(-3)
P 		139
avr 207.5
(3) 		130.4
(-0.8) 		98.8
(-2.3) 		84.7
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 212.4
(1.7)
P 		251.8
(3)
P 		94.9
(-2.1)
P 		67.3
(-3)
P 		150.6
(-0.3)
P 		75.7
(-2.7)
P 		185
B 391.7
(3)
P 		298.1
(1)
P 		108
(-3)
P 		137.2
(-2.4)
P 		133
(-2.5)
P 		140.8
(-2.3)
P 		284
C 254.9
(2.8)
P 		260.4
(3)
P 		110.5
(-1.9)
P 		76
(-3)
P 		107
(-2)
P 		133.1
(-1.1)
P 		184
avr 286.3
(3) 		270.1
(2.5) 		104.5
(-2.7) 		93.5
(-3) 		130.2
(-1.9) 		116.5
(-2.3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22045
Sequence Type Exemplar sequence
Representative Public ID CEK018H2R NCBI
Target Description CEK018H2R_rc /REP_DB=TREMBL Accession /GB=D32570 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H05G16.1 ENSEMBL cdna:known chromosome:CEL140:X:11576176:11581647:1 gene:H05G16.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11581209-11581637(+) 100.0 100.0
Public Domain and Genome References
Ensembl H05G16.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB10024 Hypothetical protein H05G16.1 [Caenorhabditis elegans] ref|NP_509934.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-3) [Caenorhabditis elegans] 0.0
blast CAE70613 Hypothetical protein CBG17296 [Caenorhabditis briggsae] 0.0
blast AAP37793 At5g61270 [Arabidopsis thaliana] gb|AAO00851.1| Unknown protein [Arabidopsis thaliana] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 2.3E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
H05G16.1 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:174741_AT
attcttgttattttctcgtcatctgatgaacttttatttaaaaattgttaactgagatta
ataaatgattgaaaaagtgcatttccggaacacattgaactaaaagcgacatgacattat
atatcccatgcttcagtatcacttcactttttttcctatttctttcccattaactgcaat
tttatcagtttatatctgtctgttcctttttactttcattatttcttctactatccccac
acatcactgatgtccccataactacacgtgcacttgttctagaataatataatttcaatt
tgtatttgatctcggttcctttgattgtaattctattctttatttttctgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTGTTATTTTCTCGTCATCTG 669 11 53 Antisense
GTGCATTTCCGGAACACATTGAACT 651 479 129 Antisense
TATATCCCATGCTTCAGTATCACTT 354 661 172 Antisense
ATTTCTTTCCCATTAACTGCAATTT 37 17 210 Antisense
AGTTTATATCTGTCTGTTCCTTTTT 144 63 239 Antisense
GTCTGTTCCTTTTTACTTTCATTAT 562 471 250 Antisense
ACACATCACTGATGTCCCCATAACT 225 111 291 Antisense
TACACGTGCACTTGTTCTAGAATAA 675 641 315 Antisense
ATTTGTATTTGATCTCGGTTCCTTT 166 19 350 Antisense
CTCGGTTCCTTTGATTGTAATTCTA 682 229 363 Antisense
AATTCTATTCTTTATTTTTCTGACG 360 177 381 Antisense
Sequence Source Affymetrix Proprietary Database