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[174740_s_at]

Description CEK033C3R_rc /REP_DB=TREMBL Accession /GB=D33592 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33c3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 65      6grp_total > 55      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 636
1 2 3 4 range
A 1145.3
(3)
P 		889.1
(0.6)
P 		814.1
(-0.1)
P 		509.1
(-3)
P 		636
B 1132.9
(3)
P 		1018.5
(1.8)
P 		878.8
(0.4)
P 		554
(-3)
P 		579
C 1130.5
(3)
P 		940.5
(0.5)
P 		993.1
(1.2)
P 		681.7
(-3)
P 		449
avr 1136.2
(3) 		949.4
(1) 		895.3
(0.4) 		581.6
(-3) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 627
1 2 3 4 5 6 range
A 1168.9
(-1.5)
P 		1325.1
(0.4)
P 		1531.2
(3)
P 		1372
(1)
P 		1049.5
(-3)
P 		1199.3
(-1.1)
P 		482
B 1156.4
(-2.2)
P 		1214.8
(-1.1)
P 		1419.8
(3)
P 		1116.4
(-3)
P 		1152.5
(-2.3)
P 		1303.7
(0.7)
P 		303
C 1068.9
(-1.3)
P 		1277.4
(0.9)
P 		1077.8
(-1.2)
P 		1229.4
(0.4)
P 		904.4
(-3)
P 		1479.5
(3)
P 		575
avr 1131.4
(-1.1) 		1272.4
(1.6) 		1342.9
(3) 		1239.3
(1) 		1035.5
(-3) 		1327.5
(2.7) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 417
(3)
P 		193
(-0.9)
P 		212.8
(-0.6)
P 		74.5
(-3)
P 		343
B 361.3
(3)
P 		251.5
(0.3)
P 		203.6
(-0.9)
P 		118.1
(-3)
P 		243
C 374.2
(3)
P 		270.4
(0.6)
P 		346.1
(2.3)
P 		114.9
(-3)
P 		259
avr 384.2
(3) 		238.3
(-0.1) 		254.2
(0.2) 		102.5
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 215.5
(-3)
P 		471.3
(3)
P 		333.5
(-0.2)
P 		348
(0.1)
P 		316.7
(-0.6)
P 		292
(-1.2)
P 		256
B 402.4
(0.4)
P 		404.4
(0.4)
P 		344.8
(-1.5)
P 		295.7
(-3)
P 		468.2
(2.4)
P 		486.1
(3)
P 		190
C 396.2
(0.6)
P 		389.8
(0.4)
P 		274.3
(-2.3)
P 		247.2
(-3)
P 		292.7
(-1.9)
P 		495.3
(3)
P 		248
avr 338
(-1.1) 		421.8
(2.9) 		317.5
(-2) 		297
(-3) 		359.2
(-0.1) 		424.5
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20219
Sequence Type Exemplar sequence
Representative Public ID CEK033C3R NCBI
Target Description CEK033C3R_rc /REP_DB=TREMBL Accession /GB=D33592 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33c3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059576 NCBI Caenorhabditis elegans T10B11.2 (T10B11.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000021321 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6939292:6944959:1 11/11 None
SNAP00000021309 ENSEMBL cdna:SNAP chromosome:CEL140:I:6941985:6944959:1 11/11 None
T10B11.2 ENSEMBL cdna:known chromosome:CEL140:I:6939270:6945050:1 gene:T10B11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6944570-6944968(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.2
Entrez Gene 172423 Entrez gene
SwissProt Q9TZI1 EMBL-EBI
WormBase CE18241 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7205 protein kinase C activation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4143 diacylglycerol kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491977 T10B11.2 [Caenorhabditis elegans] gb|AAC67466.1| Hypothetical protein T10B11.2 [Caenorhabditis elegans] 0.0
blast CAE67276 Hypothetical protein CBG12724 [Caenorhabditis briggsae] 0.0
blast AAH74350 MGC84197 protein [Xenopus laevis] 4.0E-44
blast AAH74350 MGC84197 protein [Xenopus laevis] 5.0E-44
Sequence
Target Sequence 
>C. ELEGANS:174740_S_AT
ctctacgaacttgatccatctctaaattgttaccgggtgaccaagtggtcctatcagcca
gatgccgatcaagaagaccctggcgtttggaaccttgatggagaaattttggagcaacca
aaagatgagccactgcatttcaagcttcatccacagcttatctcattcttcggaagagac
gcagccatggtaaagccgacaaaaagaagcttcataaaaaagcgaaaatcttcgatcgtt
tatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTACGAACTTGATCCATCTCTAA 447 229 22 Antisense
GATCCATCTCTAAATTGTTACCGGG 44 417 34 Antisense
TGTTACCGGGTGACCAAGTGGTCCT 576 449 49 Antisense
CAAGTGGTCCTATCAGCCAGATGCC 17 185 63 Antisense
GCCAGATGCCGATCAAGAAGACCCT 436 279 78 Antisense
CCCTGGCGTTTGGAACCTTGATGGA 294 259 99 Antisense
GAGCCACTGCATTTCAAGCTTCATC 418 385 148 Antisense
TCCACAGCTTATCTCATTCTTCGGA 229 589 171 Antisense
ATTCTTCGGAAGAGACGCAGCCATG 518 11 186 Antisense
GACGCAGCCATGGTAAAGCCGACAA 33 381 199 Antisense
GCGAAAATCTTCGATCGTTTATCAA 46 289 243 Antisense
Sequence Source Affymetrix Proprietary Database