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[174739_at]

Description CEK080A7R_rc /REP_DB=TREMBL Accession /GB=D71689 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80a7 : 3prime end, single read.
Cluster 6grp_total > 64      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 20
(-0.6)
A 		24.4
(0.2)
A 		38.5
(3)
A 		7.8
(-3)
A 		31
B 20
(-3)
P 		38.1
(2.4)
P 		40.2
(3)
P 		29.1
(-0.3)
M 		20
C 41.2
(0.2)
P 		66.7
(3)
P 		19.2
(-2.1)
A 		11.3
(-3)
A 		55
avr 27.1
(-0.6) 		43.1
(3) 		32.6
(0.7) 		16.1
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 20.1
(-2.6)
A 		27.5
(-1)
P 		47.4
(3)
A 		40
(1.5)
A 		17.9
(-3)
A 		30.3
(-0.5)
A 		30
B 18.5
(-1)
A 		9.9
(-2.7)
A 		8.5
(-3)
A 		38.3
(3)
P 		23.4
(0)
P 		34.6
(2.3)
A 		30
C 27.7
(-1.4)
P 		17.4
(-2.8)
P 		58.9
(3)
P 		32.6
(-0.7)
A 		16.2
(-3)
A 		23.1
(-2)
A 		43
avr 22.1
(-1.9) 		18.3
(-3) 		38.3
(3) 		37
(2.6) 		19.2
(-2.7) 		29.3
(0.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.3
(1.1)
A 		5.3
(-0.2)
A 		10.1
(3)
A 		1.1
(-3)
A 		9
B 6.4
(-2.6)
P 		9.4
(3)
P 		9.3
(2.8)
P 		6.2
(-3)
M 		3
C 13.7
(1.1)
P 		19.2
(3)
P 		6.7
(-1.3)
A 		1.9
(-3)
A 		17
avr 9.1
(1.4) 		11.3
(3) 		8.7
(1.1) 		3.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.7
(-3)
A 		9.8
(2.5)
P 		10.3
(3)
A 		10.1
(2.8)
A 		5.4
(-1.5)
A 		7.4
(0.4)
A 		7
B 6.4
(-0.6)
A 		3.3
(-2.3)
A 		2.1
(-3)
A 		10.1
(1.4)
P 		9.5
(1.1)
P 		12.9
(3)
A 		11
C 10.3
(0.1)
P 		5.3
(-2.9)
P 		15
(3)
P 		6.6
(-2.1)
A 		5.2
(-3)
A 		7.7
(-1.5)
A 		10
avr 6.8
(-1.7) 		6.1
(-3) 		9.1
(2.6) 		8.9
(2.3) 		6.7
(-1.9) 		9.3
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21081
Sequence Type Exemplar sequence
Representative Public ID CEK080A7R NCBI
Target Description CEK080A7R_rc /REP_DB=TREMBL Accession /GB=D71689 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026062 NCBI Caenorhabditis elegans D2045.9 (D2045.9) mRNA, complete cds. 11/11 None
D2045.9.1 ENSEMBL cdna:known chromosome:CEL140:III:10475851:10479666:1 gene:D2045.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022546 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10479291-10479618(+) 89.3 100.0
Public Domain and Genome References
Gene Title
Ensembl D2045.9
Entrez Gene 3565069 Entrez gene
SwissProt Q18989 EMBL-EBI
WormBase CE33988 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20790.1.S1_AT similar to glycosyltransferase 25 domain containing 2 cfa
DROSOPHILA_2:1627512_AT dm
DROSGENOME1:145827_AT dm
CHICKEN:GGA.16893.1.S1_AT glycosyltransferase 25 domain containing 2 gga
CHICKEN:GGA.16893.1.S1_S_AT glycosyltransferase 25 domain containing 2 gga
CHICKEN:GGA.3249.1.S1_AT glycosyltransferase 25 domain containing 2 gga
HG-U133_PLUS_2:209883_AT glycosyltransferase 25 domain containing 2 hs
HG-U133A:209883_AT glycosyltransferase 25 domain containing 2 hs
HG-U133A_2:209883_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBD:RC_N39138_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBD:RC_F01576_AT glycosyltransferase 25 domain containing 2 hs
U133_X3P:G12620187_3P_AT glycosyltransferase 25 domain containing 2 hs
HG-U95AV2:39550_AT glycosyltransferase 25 domain containing 2 hs
HU35KSUBA:W27139_AT Glycosyltransferase 25 domain containing 2 hs
HU35KSUBB:RC_H11448_AT Glycosyltransferase 25 domain containing 2 hs
MOE430B:1437930_AT glycosyltransferase 25 domain containing 2 mm
MOUSE430_2:1437930_AT glycosyltransferase 25 domain containing 2 mm
MG-U74BV2:114233_AT glycosyltransferase 25 domain containing 2 mm
MG-U74CV2:129112_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
MOUSE430_2:1442534_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
MOE430B:1442534_AT Glycosyltransferase 25 domain containing 2, mRNA (cDNA clone MGC:92944 IMAGE:5706069) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9103 lipopolysaccharide biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84699 Hypothetical protein D2045.9 [Caenorhabditis elegans] ref|NP_001021233.1| D2045.9 [Caenorhabditis elegans] 0.0
blast CAE71465 Hypothetical protein CBG18383 [Caenorhabditis briggsae] 0.0
blast EAA00118 ENSANGP00000014001 [Anopheles gambiae str. PEST] ref|XP_320324.2| ENSANGP00000014001 [Anopheles gambiae str. PEST] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002654 EMBL-EBI Glycosyl transferase, family 25 1.3E-36
Sequence
Target Sequence 
>C. ELEGANS:174739_AT
attctatttatttcttgttattcatcatttttgtgtgggtgtctttctctttcccatcca
aaaatgttcggttttctcgaagtgggttttattcagttttaaaaatgcgcgcatttgtac
cgtgcgggtctcgcaacgaaaactttaacaagtagaaaatattcggtattttcacgaatt
attgataattattccatcgatttttaaaatgaaaattcgatattttccaaggacctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTATTTATTTCTTGTTATTCAT 461 11 64 Antisense
TTTATTTCTTGTTATTCATCATTTT 272 675 70 Antisense
ATTTTTGTGTGGGTGTCTTTCTCTT 391 15 90 Antisense
CTTTCTCTTTCCCATCCAAAAATGT 581 221 106 Antisense
CATCCAAAAATGTTCGGTTTTCTCG 694 207 118 Antisense
TTCTCGAAGTGGGTTTTATTCAGTT 399 691 137 Antisense
TATTCAGTTTTAAAAATGCGCGCAT 334 661 153 Antisense
AAATGCGCGCATTTGTACCGTGCGG 323 119 166 Antisense
TCGGTATTTTCACGAATTATTGATA 497 605 226 Antisense
TATTGATAATTATTCCATCGATTTT 183 665 243 Antisense
ATTCGATATTTTCCAAGGACCTACT 312 5 278 Antisense
Sequence Source Affymetrix Proprietary Database