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[174738_at]

Description CEK038D2R_rc /REP_DB=TREMBL Accession /GB=D33930 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk38d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 87      6grp_total > 48      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1214
1 2 3 4 range
A 1434.7
(3)
P 		781.2
(-1.3)
P 		514
(-3)
P 		960.5
(-0.1)
P 		921
B 1723.1
(3)
P 		614.9
(-2.5)
P 		509.5
(-3)
P 		861
(-1.3)
P 		1214
C 1450.6
(3)
P 		645.5
(-2.4)
P 		549.4
(-3)
P 		739.6
(-1.7)
P 		901
avr 1536.1
(3) 		680.5
(-2.1) 		524.3
(-3) 		853.7
(-1) 		1012

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1278
1 2 3 4 5 6 range
A 1644.7
(3)
P 		1258
(0.7)
P 		662.1
(-2.8)
P 		622.9
(-3)
P 		1362.4
(1.3)
P 		1624.4
(2.9)
P 		1022
B 1532.9
(1.1)
P 		1207.1
(-0.5)
P 		718.4
(-3)
P 		1091.1
(-1.1)
P 		1024.5
(-1.4)
P 		1901.3
(3)
P 		1183
C 1220.8
(-0.3)
P 		1122.4
(-1.2)
P 		928.6
(-2.8)
P 		901.4
(-3)
P 		1025.2
(-2)
P 		1620.5
(3)
P 		719
avr 1466.1
(1.4) 		1195.8
(-0.3) 		769.7
(-3) 		871.8
(-2.4) 		1137.4
(-0.7) 		1715.4
(3) 		946
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 522.4
(3)
P 		169.6
(-2.5)
P 		134.4
(-3)
P 		140.6
(-2.9)
P 		388
B 549.5
(3)
P 		151.9
(-2.5)
P 		118.1
(-3)
P 		183.5
(-2.1)
P 		431
C 480.2
(3)
P 		185.6
(-2)
P 		191.5
(-1.9)
P 		124.7
(-3)
P 		356
avr 517.4
(3) 		169
(-2.7) 		148
(-3) 		149.6
(-3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 303.2
(0.1)
P 		447.4
(3)
P 		144.2
(-3)
P 		158
(-2.7)
P 		411.1
(2.3)
P 		395.5
(2)
P 		303
B 533.4
(1)
P 		401.8
(-0.4)
P 		174.5
(-3)
P 		289
(-1.7)
P 		416.2
(-0.3)
P 		709
(3)
P 		535
C 452.5
(1.5)
P 		342.5
(-0.3)
P 		236.3
(-2.1)
P 		181.3
(-3)
P 		331.7
(-0.5)
P 		542.5
(3)
P 		361
avr 429.7
(1) 		397.2
(0.5) 		185
(-3) 		209.4
(-2.6) 		386.3
(0.3) 		549
(3) 		364
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20479
Sequence Type Exemplar sequence
Representative Public ID CEK038D2R NCBI
Target Description CEK038D2R_rc /REP_DB=TREMBL Accession /GB=D33930 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk38d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063493(11), NM_182149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063493 NCBI Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds. 11/11 None
NM_182149 NCBI Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds. 11/11 None
B0457.1b ENSEMBL cdna:known chromosome:CEL140:II:8896752:8908531:1 gene:B0457.1 11/11 A 
B0457.1a ENSEMBL cdna:known chromosome:CEL140:II:8896752:8908547:1 gene:B0457.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174419 3 2 NM_063493 174738_at (11), 192409_at (11)
NM_182149 174738_at (11), 192409_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8908120-8908517(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0457.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91091 Hypothetical protein B0457.1a [Caenorhabditis elegans] ref|NP_495894.1| LATrophilin receptor family member (lat-1) [Caenorhabditis elegans] gb|AAQ84877.1| latrophilin-like protein LAT-1A [Caenorhabditis elegans] 0.0
blast CAD59141 Hypothetical protein B0457.1b [Caenorhabditis elegans] ref|NP_871949.1| LATrophilin receptor family member (lat-1) [Caenorhabditis elegans] gb|AAQ84878.1| latrophilin-like protein LAT-1B [Caenorhabditis elegans] 0.0
blast CAE59757 Hypothetical protein CBG03206 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 3.0E-15
Pfam IPR000203 EMBL-EBI GPS domain 1.1E-23
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 4.2E-44
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 4.7E-102
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 3.0E-15
Pfam IPR000203 EMBL-EBI GPS domain 1.1E-23
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 1.7E-31
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 4.7E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495894.1 7 554-576,583-605,615-634,654-676,691-713,742-764,774-796
NP_871949.1 7 552-574,581-603,613-632,652-674,689-711,740-762,772-794
B0457.1b 7 552-574,581-603,613-632,652-674,689-711,740-762,772-794
B0457.1a 7 554-576,583-605,615-634,654-676,691-713,742-764,774-796
Sequence
Target Sequence 
>C. ELEGANS:174738_AT
tcctccaatgttcgggtattccccgttgtgacatttctctttctctttaattctttgatc
atttttgagccatgtcagaaattacctcgaccccataagctttaagcacgctttcagaga
attaatgtaatactggtttaatatgaattgtaataatttgttttatgagtttactccatc
acacatgtttctaaattttaaatgagatatttaaaagtatagattccacattctcattct
cgaaatcacgtcccccgttgtgctcattcccgccggtagttattgaattttgttgtagag
attactgtattttacttttcttgttattttacctccgtaacatgcattttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCAATGTTCGGGTATTCCCCG 543 589 15 Antisense
GTTCGGGTATTCCCCGTTGTGACAT 301 435 24 Antisense
TTGTGACATTTCTCTTTCTCTTTAA 116 709 40 Antisense
ATGTCAGAAATTACCTCGACCCCAT 432 47 86 Antisense
TCGACCCCATAAGCTTTAAGCACGC 161 601 101 Antisense
GAGTTTACTCCATCACACATGTTTC 380 399 181 Antisense
GTATAGATTCCACATTCTCATTCTC 155 453 231 Antisense
ATTCTCATTCTCGAAATCACGTCCC 233 11 244 Antisense
GCTCATTCCCGCCGGTAGTTATTGA 150 301 276 Antisense
GATTACTGTATTTTACTTTTCTTGT 197 431 314 Antisense
TTACCTCCGTAACATGCATTTTATC 72 683 343 Antisense
Sequence Source Affymetrix Proprietary Database