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[174737_at]

Description CEK067E8R_rc /REP_DB=TREMBL Accession /GB=D71328 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk67e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 1278.8
(3)
P 		804.7
(-2.4)
P 		754.5
(-3)
P 		987.6
(-0.3)
P 		524
B 955.9
(1)
P 		815.2
(-1.2)
P 		699.5
(-3)
P 		1088.5
(3)
P 		389
C 1161.3
(3)
P 		951.2
(-0.2)
P 		800.6
(-2.5)
P 		767.6
(-3)
P 		394
avr 1132
(3) 		857
(-1.3) 		751.5
(-3) 		947.9
(0.1) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 823
1 2 3 4 5 6 range
A 895.2
(1.9)
P 		977.2
(3)
P 		544.7
(-3)
P 		630.4
(-1.8)
P 		837.8
(1.1)
P 		694.8
(-0.9)
P 		433
B 1304.9
(3)
P 		1203
(2.2)
P 		626.4
(-2.6)
P 		766.4
(-1.5)
P 		580.7
(-3)
P 		770.6
(-1.4)
P 		724
C 1367.9
(3)
P 		660
(-2.5)
P 		931.8
(-0.4)
P 		859.7
(-0.9)
P 		731.4
(-1.9)
P 		595.4
(-3)
P 		773
avr 1189.3
(3) 		946.7
(0.1) 		701
(-2.8) 		752.2
(-2.2) 		716.6
(-2.6) 		686.9
(-3) 		502
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 465.6
(3)
P 		174.7
(-2.4)
P 		197.2
(-2)
P 		144.6
(-3)
P 		321
B 304.8
(3)
P 		201.3
(-1.4)
P 		162.1
(-3)
P 		232
(-0.1)
P 		143
C 384.4
(3)
P 		273.5
(0.4)
P 		279
(0.5)
P 		129.4
(-3)
P 		255
avr 384.9
(3) 		216.5
(-1.7) 		212.8
(-1.8) 		168.7
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 165
(-1.8)
P 		347.5
(3)
P 		118.6
(-3)
P 		159.9
(-1.9)
P 		252.8
(0.5)
P 		169.2
(-1.7)
P 		229
B 454
(3)
P 		400.4
(1.9)
P 		152.1
(-3)
P 		203
(-2)
P 		236
(-1.3)
P 		287.4
(-0.3)
P 		302
C 507
(3)
P 		201.4
(-2.5)
P 		237.2
(-1.8)
P 		172.9
(-3)
P 		236.7
(-1.9)
P 		199.3
(-2.5)
P 		334
avr 375.3
(3) 		316.4
(1.3) 		169.3
(-3) 		178.6
(-2.7) 		241.8
(-0.9) 		218.6
(-1.6) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22326
Sequence Type Exemplar sequence
Representative Public ID CEK067E8R NCBI
Target Description CEK067E8R_rc /REP_DB=TREMBL Accession /GB=D71328 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk67e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078286 NCBI Caenorhabditis elegans C06G1.4 (C06G1.4) mRNA, complete cds. 11/11 None
C06G1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:16613362:16617800:1 gene:C06G1.4 11/11 None
C06G1.4.2 ENSEMBL cdna:known chromosome:CEL140:X:16613364:16616774:1 gene:C06G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16616419-16616753(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ain-1
Ensembl C06G1.4
Entrez Gene 181719 Entrez gene
SwissProt Q17740 EMBL-EBI
WormBase CE03967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK32947 Hypothetical protein C06G1.4 [Caenorhabditis elegans] ref|NP_510687.2| C06G1.4 [Caenorhabditis elegans] pir||T30076 hypothetical protein C06G1.4 - Caenorhabditis elegans 0.0
blast CAE69956 Hypothetical protein CBG16346 [Caenorhabditis briggsae] 1.0E-143
blast AAO61448 Hypothetical protein B0041.2c [Caenorhabditis elegans] ref|NP_001020957.1| B0041.2c [Caenorhabditis elegans] 7.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174737_AT
aacgtggtcttgtgaatgttctctctatcttgtcgtctccttccttctttactgctgatc
agacggggaaaattacacgttttttgtatttcacctctcgttttgccatctccagataat
caatttttcttgtttaaggggaggctctcgcctttccccctcccactaagaataatttgg
tggctggtgcttggtctcacagggattccaggtttatgtctgccagttcataccttctct
tctctctctctcataataggggtctttgttccaacaatttccaaccacgcgtaaatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTGGTCTTGTGAATGTTCTCTC 386 143 16 Antisense
TTGTGAATGTTCTCTCTATCTTGTC 115 709 25 Antisense
CTTCCTTCTTTACTGCTGATCAGAC 570 219 55 Antisense
GATCAGACGGGGAAAATTACACGTT 124 421 72 Antisense
CACGTTTTTTGTATTTCACCTCTCG 701 197 91 Antisense
CTCGTTTTGCCATCTCCAGATAATC 262 231 112 Antisense
CCAGATAATCAATTTTTCTTGTTTA 528 271 127 Antisense
TCTTGTTTAAGGGGAGGCTCTCGCC 668 607 143 Antisense
GGGATTCCAGGTTTATGTCTGCCAG 270 497 217 Antisense
TTATGTCTGCCAGTTCATACCTTCT 302 681 229 Antisense
AATTTCCAACCACGCGTAAATCCAT 334 175 291 Antisense
Sequence Source Affymetrix Proprietary Database