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[174736_at]

Description CEK065C1R_rc /REP_DB=TREMBL Accession /GB=D65631 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65c1 : 3prime end, single read.
Cluster 6grp_total > 90      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 11.9
(3)
A 		1.9
(-3)
A 		7
(0.1)
A 		10.3
(2)
A 		10
B 20.6
(0.2)
A 		12.8
(-1.4)
A 		34.2
(3)
A 		5.1
(-3)
A 		29
C 4.6
(-3)
A 		5.5
(-2.9)
A 		14.9
(-2.2)
A 		86.6
(3)
P 		82
avr 12.4
(-1.7) 		6.7
(-3) 		18.7
(-0.4) 		34
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 22
(2.7)
A 		5.4
(-2.7)
A 		4.5
(-3)
A 		7.2
(-2.1)
A 		23
(3)
A 		5.1
(-2.8)
A 		19
B 8.2
(-2.4)
A 		5.9
(-2.8)
A 		5.1
(-3)
A 		34.7
(3)
A 		11.9
(-1.6)
A 		22.8
(0.6)
A 		30
C 2.5
(-2.9)
A 		36.3
(1.7)
A 		6.3
(-2.4)
A 		45.7
(3)
A 		1.8
(-3)
A 		38.5
(2)
A 		44
avr 10.9
(-1.6) 		15.9
(-0.3) 		5.3
(-3) 		29.2
(3) 		12.2
(-1.3) 		22.1
(1.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.3
(3)
A 		0.4
(-3)
A 		1.8
(-0.8)
A 		1.5
(-1.3)
A 		4
B 6.6
(1.9)
A 		3.2
(-1.1)
A 		7.9
(3)
A 		1.1
(-3)
A 		7
C 1.5
(-3)
A 		1.6
(-3)
A 		5.2
(-1.3)
A 		14.6
(3)
P 		13
avr 4.1
(0.6) 		1.7
(-3) 		5
(2) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(0.1)
A 		1.9
(-2.1)
A 		1
(-3)
A 		1.8
(-2.2)
A 		7
(3)
A 		1.2
(-2.8)
A 		6
B 2.9
(-1.7)
A 		2
(-2.4)
A 		1.2
(-3)
A 		9.2
(3)
A 		4.9
(-0.2)
A 		8.5
(2.5)
A 		8
C 0.9
(-2.9)
A 		11.1
(2.1)
A 		1.6
(-2.5)
A 		9.2
(1.2)
A 		0.6
(-3)
A 		12.9
(3)
A 		12
avr 2.6
(-1.7) 		5
(0.6) 		1.3
(-3) 		6.7
(2.2) 		4.2
(-0.2) 		7.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20725
Sequence Type Exemplar sequence
Representative Public ID CEK065C1R NCBI
Target Description CEK065C1R_rc /REP_DB=TREMBL Accession /GB=D65631 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK065C1R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK065C1R CEK065C1R_rc /REP_DB=TREMBL Accession /GB=D65631 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65c1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062173 10/11 Negative Strand Matching Probes A 
W10G11.1 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3560011-3560665(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174736_AT
gaacggtatcgcagaacatgagggttatgttgacagcgtagacgaatttttgttcgatca
ggcaatcgagtgtgcggcggcaacggttgaactttccacagttttcgatcatttttgtgg
tgctggttttgttggagatattgaagccttttgcgttgtcacccagttcgatgaaaacct
ccaagcatttcacggcctttggacctccagggtttgtacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGTATCGCAGAACATGAGGGT 96 349 28 Antisense
GAGGGTTATGTTGACAGCGTAGACG 105 403 47 Antisense
TCAGGCAATCGAGTGTGCGGCGGCA 498 621 85 Antisense
GGCGGCAACGGTTGAACTTTCCACA 696 539 103 Antisense
ACTTTCCACAGTTTTCGATCATTTT 287 103 118 Antisense
TTTTTGTGGTGCTGGTTTTGTTGGA 339 673 139 Antisense
TATTGAAGCCTTTTGCGTTGTCACC 512 665 166 Antisense
GCGTTGTCACCCAGTTCGATGAAAA 530 253 180 Antisense
GTTCGATGAAAACCTCCAAGCATTT 672 441 193 Antisense
CCAAGCATTTCACGGCCTTTGGACC 192 277 208 Antisense
TTTGGACCTCCAGGGTTTGTACAAT 379 665 225 Antisense
Sequence Source Affymetrix Proprietary Database