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[174735_at]

Description CEK014F6R_rc /REP_DB=TREMBL Accession /GB=D32420 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 10      6grp_total > 16      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 807
1 2 3 4 range
A 1573.4
(3)
P 		1344.2
(-3)
P 		1356.1
(-2.7)
P 		1373.7
(-2.2)
P 		229
B 1880.6
(3)
P 		1339.7
(-1)
P 		1073.8
(-3)
P 		1315.8
(-1.2)
P 		807
C 1374.3
(3)
P 		1317.1
(1.8)
P 		1167.8
(-1.4)
P 		1090.3
(-3)
P 		284
avr 1609.4
(3) 		1333.7
(-1) 		1199.2
(-3) 		1259.9
(-2.1) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1354
1 2 3 4 5 6 range
A 2179.7
(3)
P 		1785.2
(1.3)
P 		930.7
(-2.5)
P 		826.1
(-3)
P 		1421.8
(-0.4)
P 		1239.1
(-1.2)
P 		1354
B 1910.2
(3)
P 		1246.7
(-0.7)
P 		844.9
(-3)
P 		1139.1
(-1.3)
P 		907.4
(-2.6)
P 		1150
(-1.3)
P 		1065
C 1673.9
(3)
P 		1432.1
(1.2)
P 		1300.5
(0.2)
P 		877.2
(-3)
P 		1234.9
(-0.3)
P 		927.7
(-2.6)
P 		797
avr 1921.3
(3) 		1488
(0.3) 		1025.4
(-2.5) 		947.5
(-3) 		1188
(-1.5) 		1105.6
(-2) 		974
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 572.9
(3)
P 		291.8
(-1.5)
P 		354.5
(-0.5)
P 		201.1
(-3)
P 		372
B 599.7
(3)
P 		330.9
(-1.6)
P 		248.8
(-3)
P 		280.4
(-2.5)
P 		351
C 454.9
(3)
P 		378.7
(1.3)
P 		407
(1.9)
P 		183.8
(-3)
P 		271
avr 542.5
(3) 		333.8
(-0.9) 		336.8
(-0.8) 		221.8
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 401.8
(-0.2)
P 		634.9
(3)
P 		202.7
(-3)
P 		209.5
(-2.9)
P 		429
(0.1)
P 		301.7
(-1.6)
P 		432
B 664.6
(3)
P 		415
(-0.3)
P 		205.2
(-3)
P 		301.7
(-1.7)
P 		368.7
(-0.9)
P 		428.8
(-0.1)
P 		459
C 620.5
(3)
P 		437
(0.5)
P 		331
(-0.9)
P 		176.4
(-3)
P 		399.6
(0)
P 		310.6
(-1.2)
P 		444
avr 562.3
(3) 		495.6
(1.8) 		246.3
(-2.7) 		229.2
(-3) 		399.1
(0.1) 		347
(-0.9) 		333
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20486
Sequence Type Exemplar sequence
Representative Public ID CEK014F6R NCBI
Target Description CEK014F6R_rc /REP_DB=TREMBL Accession /GB=D32420 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064193 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-87) (pqn-87) mRNA, complete cds. 11/11 None
Y57A10A.18 ENSEMBL cdna:known chromosome:CEL140:II:12209042:12221691:-1 gene:Y57A10A.18 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12209084-12209539(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-87
Ensembl Y57A10A.18
Entrez Gene 174861 Entrez gene
SwissProt Q9U207 EMBL-EBI
WormBase CE35684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60772 Hypothetical protein Y57A10A.18 [Caenorhabditis elegans] ref|NP_496594.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-87) [Caenorhabditis elegans] 0.0
blast T31638 hypothetical protein Y57A10A.p - Caenorhabditis elegans 0.0
blast CAE73470 Hypothetical protein CBG20921 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.80000019073486
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.620000004768372
Pfam IPR002083 EMBL-EBI MATH 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:174735_AT
attctatttgtgttttcttttcattcacactcatatttcccctgcccctttctgaaaaat
gagaaaaaaaatcaattattttttccatattttcttgatccccctttgatcccctctcaa
tgtcatcatttttttcccaccacccgagcacatatatatttctggctaaaaaagtttctt
attttttttgttattttttcttccaattttcctatctggggagcaacctacagtaccccc
cactcgtcctgagaatcttttttttctcgctttctgttgtgcttatatcatcaaaaacac
acacctagttttccctttttctccaccccattgaaaaatgtgtgtgtgtgtgatgttcac
cttttcgacatacacacacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTATTTGTGTTTTCTTTTCATT 460 11 20 Antisense
TCTTTTCATTCACACTCATATTTCC 112 617 35 Antisense
CCCCTGCCCCTTTCTGAAAAATGAG 385 261 58 Antisense
TCCCCTCTCAATGTCATCATTTTTT 241 597 129 Antisense
CACCACCCGAGCACATATATATTTC 191 203 157 Antisense
TTTCTTCCAATTTTCCTATCTGGGG 380 669 216 Antisense
ATCTGGGGAGCAACCTACAGTACCC 81 35 233 Antisense
CCCACTCGTCCTGAGAATCTTTTTT 663 257 258 Antisense
TTTCTCGCTTTCTGTTGTGCTTATA 639 671 282 Antisense
GTGTGTGATGTTCACCTTTTCGACA 661 487 365 Antisense
TCACCTTTTCGACATACACACACAC 122 627 376 Antisense
Sequence Source Affymetrix Proprietary Database