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[174734_at]

Description CEK064H5R_rc /REP_DB=TREMBL Accession /GB=D71284 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk64h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 13      6grp_total > 16      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2729
1 2 3 4 range
A 4355.6
(3)
P 		2350.6
(-1.4)
P 		3252
(0.6)
P 		1626.9
(-3)
P 		2729
B 4014.7
(3)
P 		2971.1
(0)
P 		2891.8
(-0.2)
P 		1921.7
(-3)
P 		2093
C 4138.5
(3)
P 		3170.8
(0.7)
P 		2843.4
(-0.1)
P 		1645.5
(-3)
P 		2493
avr 4169.6
(3) 		2830.8
(-0.3) 		2995.7
(0.1) 		1731.4
(-3) 		2438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2262
1 2 3 4 5 6 range
A 4020.2
(3)
P 		2798.4
(-0.4)
P 		2344.9
(-1.6)
P 		1851.1
(-3)
P 		2454.6
(-1.3)
P 		1864.4
(-3)
P 		2169
B 3567.1
(3)
P 		3202.4
(1.4)
P 		2366.4
(-2.2)
P 		2466.6
(-1.7)
P 		2175.2
(-3)
P 		2261.9
(-2.6)
P 		1392
C 3073.1
(2.3)
P 		3248.8
(3)
P 		2426.4
(-0.3)
P 		1757.8
(-3)
P 		1984
(-2.1)
P 		2313.8
(-0.8)
P 		1491
avr 3553.5
(3) 		3083.2
(1.2) 		2379.2
(-1.6) 		2025.2
(-3) 		2204.6
(-2.3) 		2146.7
(-2.5) 		1528
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1348
1 2 3 4 range
A 1585.9
(3)
P 		510.2
(-1.8)
P 		850.1
(-0.3)
P 		238.1
(-3)
P 		1348
B 1280.3
(3)
P 		733.8
(-0.8)
P 		670.1
(-1.2)
P 		409.5
(-3)
P 		871
C 1370
(3)
P 		911.6
(0.5)
P 		991
(0.9)
P 		277.5
(-3)
P 		1093
avr 1412.1
(3) 		718.5
(-0.8) 		837.1
(-0.1) 		308.4
(-3) 		1104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 741.1
(0.2)
P 		995.3
(3)
P 		510.7
(-2.4)
P 		469.5
(-2.8)
P 		740.7
(0.2)
P 		453.9
(-3)
P 		541
B 1241.2
(3)
P 		1065.9
(1.4)
P 		574.6
(-3)
P 		653.3
(-2.3)
P 		883.8
(-0.2)
P 		843.5
(-0.6)
P 		667
C 1139.1
(3)
P 		991.3
(1.9)
P 		617.6
(-1)
P 		353.5
(-3)
P 		642
(-0.8)
P 		774.6
(0.2)
P 		786
avr 1040.5
(3) 		1017.5
(2.7) 		567.6
(-2.2) 		492.1
(-3) 		755.5
(-0.1) 		690.7
(-0.8) 		548
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21101
Sequence Type Exemplar sequence
Representative Public ID CEK064H5R NCBI
Target Description CEK064H5R_rc /REP_DB=TREMBL Accession /GB=D71284 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk64h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027696 NCBI Caenorhabditis elegans Y42G9A.4b (Y42G9A.4) mRNA, complete cds. 11/11 None
Y42G9A.4b.1 ENSEMBL cdna:known chromosome:CEL140:III:6124124:6133044:-1 gene:Y42G9A.4 11/11 None
Y42G9A.4b.2 ENSEMBL cdna:known chromosome:CEL140:III:6124131:6133042:-1 gene:Y42G9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175863 4 1 NM_001027696 174734_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6124139-6124589(-) 98.0 100.0
Public Domain and Genome References
Ensembl Y42G9A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022867 Y42G9A.4b [Caenorhabditis elegans] gb|AAU20834.1| Hypothetical protein Y42G9A.4b [Caenorhabditis elegans] 0.0
blast NP_001022869 Y42G9A.4d [Caenorhabditis elegans] gb|AAU87813.1| Hypothetical protein Y42G9A.4d [Caenorhabditis elegans] 0.0
blast NP_001022868 Y42G9A.4c [Caenorhabditis elegans] gb|AAU20835.1| Hypothetical protein Y42G9A.4c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006204 EMBL-EBI GHMP kinase 1.8E-16
Sequence
Target Sequence 
>C. ELEGANS:174734_AT
ttttgttttgtagcctattctctccgtctctaccattacctttattcttcataccttgat
ttgtgtgttgtaggaattattatatattctattggtttatatttttctaaatattttatg
ttattcctctcaagtcaacaaaaaaaacaaagattacccaccaattgcgcccattcccat
caaaaatttctacttttctattattcaatacaatttttatatgaaatccctgaaaccccc
cgctcatttttcatcttgaaaccttcccgttcgaaagctataattcaattttatttagtg
ttagaatattttttataaactgataaattctcatgtttttgttaatgtccctttcataaa
ttcagtgtgttacgattagggcccctcatagatgttttttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTTTTGTAGCCTATTCTCTCC 405 675 18 Antisense
TCTACCATTACCTTTATTCTTCATA 361 615 46 Antisense
ATTCTTCATACCTTGATTTGTGTGT 503 11 61 Antisense
TTTTATGTTATTCCTCTCAAGTCAA 700 675 131 Antisense
AACAAAGATTACCCACCAATTGCGC 553 135 163 Antisense
CGCCCATTCCCATCAAAAATTTCTA 90 257 185 Antisense
CCCCGCTCATTTTTCATCTTGAAAC 604 261 255 Antisense
ATGTTTTTGTTAATGTCCCTTTCAT 422 47 350 Antisense
GTCCCTTTCATAAATTCAGTGTGTT 618 475 364 Antisense
TCAGTGTGTTACGATTAGGGCCCCT 670 607 379 Antisense
GGCCCCTCATAGATGTTTTTTCACC 384 541 397 Antisense
Sequence Source Affymetrix Proprietary Database