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[174733_at]

Description CEK031A8R_rc /REP_DB=TREMBL Accession /GB=D33443 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 10      6grp_total > 18      4grp_total > 12      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 1297.3
(0.3)
P 		1016.4
(-2.6)
P 		975.3
(-3)
P 		1555.7
(3)
P 		580
B 1127.9
(-1.9)
P 		1103.3
(-2.1)
P 		1000.7
(-3)
P 		1665.9
(3)
P 		665
C 1166.1
(-3)
P 		1225
(-2.1)
P 		1197.5
(-2.5)
P 		1554
(3)
P 		388
avr 1197.1
(-1.4) 		1114.9
(-2.4) 		1057.8
(-3) 		1591.9
(3) 		534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1484
1 2 3 4 5 6 range
A 2215.3
(3)
P 		1514.7
(-0.5)
P 		1017.5
(-3)
P 		1272.3
(-1.7)
P 		1581.2
(-0.2)
P 		1245.3
(-1.9)
P 		1198
B 1852.6
(3)
P 		1285.2
(-0.4)
P 		838.2
(-3)
P 		1471.6
(0.7)
P 		1179.9
(-1)
P 		1102.7
(-1.4)
P 		1014
C 2322.3
(3)
P 		1307.1
(-2.1)
P 		1209.1
(-2.6)
P 		1132.9
(-3)
P 		1378.3
(-1.8)
P 		1204.3
(-2.6)
P 		1189
avr 2130.1
(3) 		1369
(-1.1) 		1021.6
(-3) 		1292.3
(-1.5) 		1379.8
(-1.1) 		1184.1
(-2.1) 		1109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 472.3
(3)
P 		220.6
(-3)
P 		255
(-2.2)
P 		227.7
(-2.8)
P 		252
B 359.7
(3)
P 		272.5
(-1.1)
P 		231.9
(-3)
P 		355
(2.8)
P 		128
C 386
(1.8)
P 		352.2
(0.5)
P 		417.4
(3)
P 		262
(-3)
P 		155
avr 406
(3) 		281.8
(-3) 		301.4
(-2) 		281.6
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 408.4
(0.5)
P 		538.7
(3)
P 		221.6
(-3)
P 		322.7
(-1.1)
P 		477.1
(1.8)
P 		303.2
(-1.5)
P 		317
B 644.6
(3)
P 		427.8
(0.1)
P 		203.5
(-3)
P 		389.8
(-0.5)
P 		479.4
(0.8)
P 		411.2
(-0.2)
P 		441
C 860.8
(3)
P 		398.8
(-1.4)
P 		307.7
(-2.2)
P 		227.8
(-3)
P 		446
(-0.9)
P 		403.1
(-1.3)
P 		633
avr 637.9
(3) 		455.1
(0.2) 		244.3
(-3) 		313.4
(-1.9) 		467.5
(0.4) 		372.5
(-1) 		394
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20158
Sequence Type Exemplar sequence
Representative Public ID CEK031A8R NCBI
Target Description CEK031A8R_rc /REP_DB=TREMBL Accession /GB=D33443 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059496 NCBI Caenorhabditis elegans F57B10.1 (F57B10.1) mRNA, complete cds. 11/11 None
F57B10.1.1 ENSEMBL cdna:known chromosome:CEL140:I:6582138:6593307:1 gene:F57B10.1 11/11 None
F57B10.1.2 ENSEMBL cdna:known chromosome:CEL140:I:6588181:6593284:1 gene:F57B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6592739-6593161(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B10.1
Entrez Gene 266837 Entrez gene
SwissProt O44743 EMBL-EBI
WormBase CE37244 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96719 Hypothetical protein F57B10.1 [Caenorhabditis elegans] ref|NP_491897.2| F57B10.1 [Caenorhabditis elegans] 0.0
blast CAE67216 Hypothetical protein CBG12652 [Caenorhabditis briggsae] 0.0
blast AAH55664 Hypothetical protein LOC406853 [Danio rerio] ref|NP_998697.1| hypothetical protein LOC406853 [Danio rerio] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:174733_AT
gttaacccctatatttctattgcctgcttgtcacctccaccctaaaatagtcgtcacccc
caaccatctgagatattccaatatatgagaaactctaatcattctcgttattcctgtctt
ccatttaattggcggaaagttgttttttctaattttccatgtttacccgggttttcagtt
cttccatattttcaacccctttcccccattgttgagttttatccctatttcttgttttca
tttcctttcttttttctctctgttcaccaaattaatcaatcagaaatcaatcactttcaa
tttgagtctcttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAACCCCTATATTTCTATTGCCT 386 445 51 Antisense
TCACCTCCACCCTAAAATAGTCGTC 106 627 81 Antisense
ACCCCCAACCATCTGAGATATTCCA 373 89 106 Antisense
GAAACTCTAATCATTCTCGTTATTC 266 357 139 Antisense
CTAATCATTCTCGTTATTCCTGTCT 336 227 145 Antisense
TCCTGTCTTCCATTTAATTGGCGGA 625 593 162 Antisense
TCCCCCATTGTTGAGTTTTATCCCT 27 597 252 Antisense
TTGAGTTTTATCCCTATTTCTTGTT 426 705 262 Antisense
TTTTTTCTCTCTGTTCACCAAATTA 612 675 300 Antisense
CTCTGTTCACCAAATTAATCAATCA 361 231 308 Antisense
ATCACTTTCAATTTGAGTCTCTTAC 73 29 340 Antisense
Sequence Source Affymetrix Proprietary Database