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[174731_s_at]

Description CEK086E5R_rc /REP_DB=TREMBL Accession /GB=D64664 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 35      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 76      6grp_total > 35      4grp_total > 23      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 1334.8
(3)
P 		954.3
(-1.3)
P 		803.3
(-3)
P 		1107.3
(0.4)
P 		532
B 1509.9
(3)
P 		945
(-2.6)
P 		909.9
(-3)
P 		1348.5
(1.4)
P 		600
C 1501.3
(3)
P 		916.8
(-3)
P 		952.7
(-2.6)
P 		1252
(0.4)
P 		585
avr 1448.7
(3) 		938.7
(-2.5) 		888.6
(-3) 		1235.9
(0.7) 		560

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 1225.7
(0.7)
P 		1472.8
(3)
P 		1198.7
(0.4)
P 		835.2
(-3)
P 		1201.7
(0.4)
P 		986
(-1.6)
P 		638
B 1288.3
(1.3)
P 		1493.1
(3)
P 		1340.8
(1.7)
P 		1155.1
(0.2)
P 		777.5
(-3)
P 		1338.4
(1.7)
P 		716
C 966.1
(-2.5)
P 		1346.1
(3)
P 		998
(-2)
P 		1035.3
(-1.5)
P 		930.6
(-3)
P 		1343.3
(3)
P 		416
avr 1160
(-0.6) 		1437.3
(3) 		1179.2
(-0.3) 		1008.5
(-2.5) 		969.9
(-3) 		1222.6
(0.2) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 486
(3)
P 		207.2
(-2.2)
P 		210
(-2.1)
P 		162.1
(-3)
P 		324
B 481.5
(3)
P 		233.4
(-2.5)
P 		210.8
(-3)
P 		287.4
(-1.3)
P 		271
C 497
(3)
P 		263.6
(-1.9)
P 		332.1
(-0.5)
P 		211.1
(-3)
P 		286
avr 488.2
(3) 		234.7
(-2.7) 		251
(-2.3) 		220.2
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 226
(-2.7)
P 		523.8
(3)
P 		261.1
(-2.1)
P 		211.8
(-3)
P 		362.6
(-0.1)
P 		240.1
(-2.5)
P 		312
B 448.3
(1.4)
P 		497
(2.9)
P 		325.6
(-2.4)
P 		305.9
(-3)
P 		315.9
(-2.7)
P 		499.1
(3)
P 		193
C 358.1
(0.7)
P 		410.7
(2)
P 		254
(-1.9)
P 		208.2
(-3)
P 		301.1
(-0.7)
P 		449.7
(3)
P 		242
avr 344.1
(-0.4) 		477.2
(3) 		280.2
(-2) 		242
(-3) 		326.5
(-0.8) 		396.3
(0.9) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174731_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20848
Sequence Type Exemplar sequence
Representative Public ID CEK086E5R NCBI
Target Description CEK086E5R_rc /REP_DB=TREMBL Accession /GB=D64664 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063036 NCBI Caenorhabditis elegans C52E12.4 (C52E12.4) mRNA, complete cds. 11/11 None
C52E12.4 ENSEMBL cdna:known chromosome:CEL140:II:7012733:7022440:-1 gene:C52E12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7012751-7013085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E12.4
Entrez Gene 174146 Entrez gene
SwissProt Q18780 EMBL-EBI
WormBase CE31684 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596981_AT similar to RAB6 interacting protein 1 cfa
CANINE_2:CFA.19640.1.S1_S_AT similar to RAB6 interacting protein 1 cfa
CANINE_2:CFAAFFX.11711.1.S1_S_AT similar to RAB6 interacting protein 1 cfa
DROSOPHILA_2:1623043_S_AT dm
DROSGENOME1:147985_AT dm
CHICKEN:GGAAFFX.26626.1.S1_AT similar to RAB6 interacting protein 1 gga
CHICKEN:GGAAFFX.26626.2.S1_S_AT similar to RAB6 interacting protein 1 gga
CHICKEN:GGAAFFX.3650.1.S1_S_AT similar to RAB6 interacting protein 1 gga
HU35KSUBA:RC_AA022884_AT RAB6 interacting protein 1 hs
HU35KSUBD:RC_AA349595_AT RAB6 interacting protein 1 hs
U133_X3P:HS.26797.0.S1_3P_AT RAB6 interacting protein 1 hs
HG-U133A_2:212561_AT RAB6 interacting protein 1 hs
HG-U133_PLUS_2:212561_AT RAB6 interacting protein 1 hs
HG-U133A:212561_AT RAB6 interacting protein 1 hs
HG-U95AV2:33924_AT RAB6 interacting protein 1 hs
HG-U95E:82391_AT RAB6 interacting protein 1 hs
MU11KSUBA:C79507_RC_F_AT Rab6 interacting protein 1 mm
MU11KSUBA:AA259973_S_AT Rab6 interacting protein 1 mm
MG-U74AV2:104108_AT Rab6 interacting protein 1 mm
MOE430A:1424015_AT Rab6 interacting protein 1 mm
MOUSE430A_2:1424015_AT Rab6 interacting protein 1 mm
MOUSE430_2:1424015_AT Rab6 interacting protein 1 mm
MU19KSUBC:TC41036_AT Rab6 interacting protein 1, mRNA (cDNA clone MGC:37737 IMAGE:5067385) mm
RAE230A:1373375_AT Rab6 interacting protein 1 (predicted) rn
RAT230_2:1373375_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:RC_AA819350_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:H31373_AT Rab6 interacting protein 1 (predicted) rn
RAE230B:1383038_AT Rab6 interacting protein 1 (predicted) rn
RAT230_2:1383038_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:RC_AI072148_AT Rab6 interacting protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA93455 Hypothetical protein C52E12.4 [Caenorhabditis elegans] ref|NP_495437.2| C52E12.4 [Caenorhabditis elegans] 0.0
blast CAE66012 Hypothetical protein CBG11204 [Caenorhabditis briggsae] 0.0
blast EAA05180 ENSANGP00000008188 [Anopheles gambiae str. PEST] ref|XP_309299.2| ENSANGP00000008188 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 1.3E-31
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 1.9E-43
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 6.0E-21
Pfam IPR004012 EMBL-EBI RUN domain 7.5E-23
Sequence
Target Sequence 
>C. ELEGANS:174731_S_AT
cagtgccaacacattcttgagttctttgcgttttcagcaatagtcatgacaatttaattt
cgttttgtcaaacaatcttgcttttcgtgtgcttttccatattattgttttctcttaaaa
tctatcagcctgaccgttaaaattgccataattgtgtccttcattcttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGCCAACACATTCTTGAGTTCT 608 207 118 Antisense
ACACATTCTTGAGTTCTTTGCGTTT 296 111 126 Antisense
TTCTTGAGTTCTTTGCGTTTTCAGC 610 689 131 Antisense
GAGTTCTTTGCGTTTTCAGCAATAG 126 399 136 Antisense
GCGTTTTCAGCAATAGTCATGACAA 700 289 145 Antisense
GTGCTTTTCCATATTATTGTTTTCT 628 479 206 Antisense
ATCAGCCTGACCGTTAAAATTGCCA 697 27 241 Antisense
GCCTGACCGTTAAAATTGCCATAAT 276 283 245 Antisense
AATTGCCATAATTGTGTCCTTCATT 74 179 258 Antisense
GCCATAATTGTGTCCTTCATTCTTG 78 281 262 Antisense
ATAATTGTGTCCTTCATTCTTGTGA 223 27 265 Antisense
Sequence Source Affymetrix Proprietary Database