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[174730_at]

Description CEK086E5R_rc /REP_DB=TREMBL Accession /GB=D64664 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 30      6grp_total > 07      4grp_total > 31      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 927
1 2 3 4 range
A 1392.2
(3)
P 		485.2
(-3)
P 		546.7
(-2.6)
P 		740.3
(-1.3)
P 		907
B 1114.2
(3)
P 		464.8
(-3)
P 		562.4
(-2.1)
P 		808.7
(0.2)
P 		649
C 788.3
(2.4)
P 		621.8
(-1.3)
P 		544.8
(-3)
P 		813.2
(3)
P 		268
avr 1098.2
(3) 		523.9
(-3) 		551.3
(-2.7) 		787.4
(-0.2) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 821
1 2 3 4 5 6 range
A 830.6
(3)
P 		739.1
(1.2)
P 		596.1
(-1.7)
P 		654.4
(-0.5)
P 		531.4
(-3)
P 		693.1
(0.2)
P 		299
B 1281.5
(3)
P 		1030.6
(1.2)
P 		460.1
(-3)
P 		788.1
(-0.6)
P 		549.5
(-2.3)
P 		668.7
(-1.5)
P 		821
C 1039.3
(3)
P 		719.8
(-1)
P 		749.3
(-0.6)
P 		971
(2.1)
P 		675.4
(-1.6)
P 		561.9
(-3)
P 		477
avr 1050.5
(3) 		829.8
(0.2) 		601.8
(-2.8) 		804.5
(-0.2) 		585.4
(-3) 		641.2
(-2.3) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 506.9
(3)
P 		105.3
(-3)
P 		142.9
(-2.4)
P 		108.4
(-3)
P 		402
B 355.3
(3)
P 		114.8
(-3)
P 		130.3
(-2.6)
P 		172.3
(-1.6)
P 		241
C 261
(3)
P 		178.8
(-1)
P 		189.9
(-0.4)
P 		137.1
(-3)
P 		124
avr 374.4
(3) 		133
(-3) 		154.4
(-2.5) 		139.3
(-2.8) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 153.1
(-1.9)
P 		262.9
(3)
P 		129.8
(-3)
P 		166
(-1.4)
P 		160.3
(-1.6)
P 		168.7
(-1.2)
P 		133
B 445.9
(3)
P 		343
(1.2)
P 		111.7
(-3)
P 		208.7
(-1.3)
P 		223.3
(-1)
P 		249.3
(-0.5)
P 		334
C 385.2
(3)
P 		219.6
(-2)
P 		190.7
(-2.9)
P 		195.3
(-2.8)
P 		218.6
(-2.1)
P 		188.1
(-3)
P 		197
avr 328.1
(3) 		275.2
(1.3) 		144.1
(-3) 		190
(-1.5) 		200.7
(-1.2) 		202
(-1.1) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20848
Sequence Type Exemplar sequence
Representative Public ID CEK086E5R NCBI
Target Description CEK086E5R_rc /REP_DB=TREMBL Accession /GB=D64664 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063036 NCBI Caenorhabditis elegans C52E12.4 (C52E12.4) mRNA, complete cds. 11/11 None
C52E12.4 ENSEMBL cdna:known chromosome:CEL140:II:7012733:7022440:-1 gene:C52E12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7012751-7013085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52E12.4
Entrez Gene 174146 Entrez gene
SwissProt Q18780 EMBL-EBI
WormBase CE31684 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596981_AT similar to RAB6 interacting protein 1 cfa
CANINE_2:CFA.19640.1.S1_S_AT similar to RAB6 interacting protein 1 cfa
CANINE_2:CFAAFFX.11711.1.S1_S_AT similar to RAB6 interacting protein 1 cfa
DROSOPHILA_2:1623043_S_AT dm
DROSGENOME1:147985_AT dm
CHICKEN:GGAAFFX.26626.1.S1_AT similar to RAB6 interacting protein 1 gga
CHICKEN:GGAAFFX.26626.2.S1_S_AT similar to RAB6 interacting protein 1 gga
CHICKEN:GGAAFFX.3650.1.S1_S_AT similar to RAB6 interacting protein 1 gga
HU35KSUBA:RC_AA022884_AT RAB6 interacting protein 1 hs
HU35KSUBD:RC_AA349595_AT RAB6 interacting protein 1 hs
U133_X3P:HS.26797.0.S1_3P_AT RAB6 interacting protein 1 hs
HG-U133A_2:212561_AT RAB6 interacting protein 1 hs
HG-U133_PLUS_2:212561_AT RAB6 interacting protein 1 hs
HG-U133A:212561_AT RAB6 interacting protein 1 hs
HG-U95AV2:33924_AT RAB6 interacting protein 1 hs
HG-U95E:82391_AT RAB6 interacting protein 1 hs
MU11KSUBA:C79507_RC_F_AT Rab6 interacting protein 1 mm
MU11KSUBA:AA259973_S_AT Rab6 interacting protein 1 mm
MG-U74AV2:104108_AT Rab6 interacting protein 1 mm
MOE430A:1424015_AT Rab6 interacting protein 1 mm
MOUSE430A_2:1424015_AT Rab6 interacting protein 1 mm
MOUSE430_2:1424015_AT Rab6 interacting protein 1 mm
MU19KSUBC:TC41036_AT Rab6 interacting protein 1, mRNA (cDNA clone MGC:37737 IMAGE:5067385) mm
RAE230A:1373375_AT Rab6 interacting protein 1 (predicted) rn
RAT230_2:1373375_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:RC_AA819350_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:H31373_AT Rab6 interacting protein 1 (predicted) rn
RAE230B:1383038_AT Rab6 interacting protein 1 (predicted) rn
RAT230_2:1383038_AT Rab6 interacting protein 1 (predicted) rn
RG-U34C:RC_AI072148_AT Rab6 interacting protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA93455 Hypothetical protein C52E12.4 [Caenorhabditis elegans] ref|NP_495437.2| C52E12.4 [Caenorhabditis elegans] 0.0
blast CAE66012 Hypothetical protein CBG11204 [Caenorhabditis briggsae] 0.0
blast EAA05180 ENSANGP00000008188 [Anopheles gambiae str. PEST] ref|XP_309299.2| ENSANGP00000008188 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 1.3E-31
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 1.9E-43
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 6.0E-21
Pfam IPR004012 EMBL-EBI RUN domain 7.5E-23
Sequence
Target Sequence 
>C. ELEGANS:174730_AT
gattagtttgacgcatttttcttcccggtttcaaatgttttcctttttctgtatttttgt
catccctcttactgggtcctatttccccgtctctacattttctcagtgccaacacattct
tgagttctttgcgttttcagcaatagtcatgacaatttaatttcgttttgtcaaacaatc
ttgcttttcgtgtgcttttccatattattgttttctcttaaaatctatcagcctgaccgt
taaaattgccataattgtgtccttcattcttgtgaataacctctgaattttttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTAGTTTGACGCATTTTTCTTCC 476 425 15 Antisense
TTAGTTTGACGCATTTTTCTTCCCG 427 679 17 Antisense
TCTACATTTTCTCAGTGCCAACACA 477 613 106 Antisense
CTACATTTTCTCAGTGCCAACACAT 69 227 107 Antisense
GTCATGACAATTTAATTTCGTTTTG 416 465 160 Antisense
ATTTCGTTTTGTCAAACAATCTTGC 270 1 174 Antisense
AAACAATCTTGCTTTTCGTGTGCTT 434 129 187 Antisense
CAATCTTGCTTTTCGTGTGCTTTTC 466 181 190 Antisense
ATATTATTGTTTTCTCTTAAAATCT 400 17 216 Antisense
CTCTTAAAATCTATCAGCCTGACCG 196 229 229 Antisense
GAATAACCTCTGAATTTTTTCCCAT 145 327 288 Antisense
Sequence Source Affymetrix Proprietary Database