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[174729_s_at]

Description CEK061B9R_rc /REP_DB=TREMBL Accession /GB=D71033 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk61b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 67      6grp_total > 19      4grp_total > 58      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 1501.7
(0.7)
P 		1584.5
(2)
P 		1651.2
(3)
P 		1265.1
(-3)
P 		386
B 1306.4
(-3)
P 		1445.9
(1.1)
P 		1508.8
(3)
P 		1400.6
(-0.2)
P 		202
C 1235.8
(-0.5)
P 		1599.4
(3)
P 		1553.2
(2.6)
P 		981.8
(-3)
P 		618
avr 1348
(-0.8) 		1543.3
(2.5) 		1571.1
(3) 		1215.8
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1225
1 2 3 4 5 6 range
A 2417.3
(3)
P 		1279.8
(-2.6)
P 		1576.6
(-1.2)
P 		1206.9
(-3)
P 		2136.4
(1.6)
P 		1285.5
(-2.6)
P 		1210
B 2082.8
(3)
P 		1955.6
(1.3)
P 		1757.4
(-1.4)
P 		2046.9
(2.5)
P 		1936.4
(1)
P 		1638.1
(-3)
P 		445
C 1860.4
(3)
P 		1708.4
(1.6)
P 		1192.3
(-3)
P 		1692.7
(1.5)
P 		1455
(-0.6)
P 		1372.6
(-1.4)
P 		668
avr 2120.2
(3) 		1647.9
(-1.1) 		1508.8
(-2.3) 		1648.8
(-1.1) 		1842.6
(0.6) 		1432.1
(-3) 		688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 546.8
(3)
P 		343.9
(-0.4)
P 		431.6
(1.1)
P 		185.2
(-3)
P 		362
B 416.6
(3)
P 		357.1
(-0)
P 		349.6
(-0.4)
P 		298.5
(-3)
P 		118
C 409.1
(0.9)
P 		459.8
(1.7)
P 		541.3
(3)
P 		165.6
(-3)
P 		376
avr 457.5
(3) 		386.9
(1.2) 		440.8
(2.6) 		216.4
(-3) 		241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 445.6
(-0.5)
P 		455.1
(-0.4)
P 		343.3
(-2.3)
P 		306.1
(-3)
P 		644.7
(3)
P 		313
(-2.9)
P 		339
B 724.7
(2)
P 		650.9
(0.7)
P 		426.7
(-3)
P 		542.2
(-1.1)
P 		786.7
(3)
P 		610.8
(0.1)
P 		360
C 689.6
(3)
P 		521.3
(0.4)
P 		303.5
(-3)
P 		340.4
(-2.4)
P 		470.8
(-0.4)
P 		459.5
(-0.6)
P 		386
avr 620
(2.7) 		542.4
(1) 		357.8
(-3) 		396.2
(-2.2) 		634.1
(3) 		461.1
(-0.8) 		276
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174729_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22335
Sequence Type Exemplar sequence
Representative Public ID CEK061B9R NCBI
Target Description CEK061B9R_rc /REP_DB=TREMBL Accession /GB=D71033 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk61b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078083 NCBI Caenorhabditis elegans F20D1.1 (F20D1.1) mRNA, complete cds. 11/11 None
F20D1.1 ENSEMBL cdna:known chromosome:CEL140:X:14968839:14970189:-1 gene:F20D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14968857-14969179(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D1.1
Entrez Gene 181591 Entrez gene
SwissProt Q93533 EMBL-EBI
WormBase CE09494 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628390_AT dm
DROSOPHILA_2:1637061_AT dm
DROSOPHILA_2:1637808_A_AT dm
DROSGENOME1:148825_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01743 Hypothetical protein F20D1.1 [Caenorhabditis elegans] ref|NP_510484.1| F20D1.1 [Caenorhabditis elegans] 4.0E-81
blast CAE63277 Hypothetical protein CBG07654 [Caenorhabditis briggsae] 3.0E-80
blast XP_623881 PREDICTED: similar to ENSANGP00000015974 [Apis mellifera] 4.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510484.1 3 32-54,97-116,121-140
F20D1.1 3 32-54,97-116,121-140
Sequence
Target Sequence 
>C. ELEGANS:174729_S_AT
ccctcaacccatccagtaattttcactttgtctgtccattttcactatatatttatgttt
tcaagtatttatttctcatacatctttcctcatctgctttactctcccccctcctctcac
ttaagcgttttatcttcctatgcaatttgaccacgaccaactagtttggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCAACCCATCCAGTAATTTTCA 456 259 22 Antisense
GTAATTTTCACTTTGTCTGTCCATT 392 463 37 Antisense
ACTTTGTCTGTCCATTTTCACTATA 201 103 46 Antisense
TGTCTGTCCATTTTCACTATATATT 315 557 50 Antisense
TATGTTTTCAAGTATTTATTTCTCA 188 655 75 Antisense
TTTATTTCTCATACATCTTTCCTCA 56 675 89 Antisense
TTAAGCGTTTTATCTTCCTATGCAA 13 677 142 Antisense
GCGTTTTATCTTCCTATGCAATTTG 464 291 146 Antisense
CTTCCTATGCAATTTGACCACGACC 419 219 155 Antisense
GCAATTTGACCACGACCAACTAGTT 476 321 163 Antisense
TGACCACGACCAACTAGTTTGGATC 548 567 169 Antisense
Sequence Source Affymetrix Proprietary Database