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[174728_at]

Description CEK039E6R_rc /REP_DB=TREMBL Accession /GB=D34006 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 285.6
(-2.5)
P 		269.5
(-3)
P 		287.8
(-2.5)
P 		470.3
(3)
P 		201
B 351.4
(3)
P 		241
(-2.6)
P 		232.5
(-3)
P 		333.9
(2.1)
P 		119
C 269.2
(-2.1)
P 		261.1
(-2.4)
P 		242.1
(-3)
P 		418.9
(3)
P 		177
avr 302.1
(-1.1) 		257.2
(-2.9) 		254.1
(-3) 		407.7
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 493.5
(3)
P 		294.4
(-2.6)
P 		377.6
(-0.2)
P 		278.4
(-3)
P 		421.8
(1)
P 		474.6
(2.5)
P 		215
B 468.7
(2.1)
P 		377.7
(0.3)
P 		201.6
(-3)
P 		318.8
(-0.8)
P 		296.7
(-1.2)
P 		518.2
(3)
P 		317
C 420.8
(-0.2)
P 		399.2
(-0.6)
P 		274.1
(-3)
P 		315.1
(-2.2)
P 		360
(-1.4)
P 		588.7
(3)
P 		315
avr 461
(1.4) 		357.1
(-1.2) 		284.4
(-3) 		304.1
(-2.5) 		359.5
(-1.1) 		527.2
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 104
(3)
P 		58.5
(-3)
P 		75.2
(-0.8)
P 		68.8
(-1.6)
P 		46
B 112.1
(3)
P 		59.5
(-2.4)
P 		53.9
(-3)
P 		71.2
(-1.2)
P 		58
C 89.1
(3)
P 		75.1
(-1.5)
P 		84.4
(1.5)
P 		70.6
(-3)
P 		19
avr 101.7
(3) 		64.4
(-3) 		71.2
(-1.9) 		70.2
(-2.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 91
(-0.8)
P 		104.7
(0.6)
P 		82.2
(-1.8)
P 		70.6
(-3)
P 		127.3
(3)
P 		115.6
(1.8)
P 		57
B 163.1
(1.7)
P 		125.7
(0.2)
P 		49
(-3)
P 		84.4
(-1.5)
P 		120.5
(-0)
P 		193.2
(3)
P 		144
C 156
(1.2)
P 		121.8
(-0.4)
P 		69.8
(-2.7)
P 		63.4
(-3)
P 		116.5
(-0.6)
P 		197.1
(3)
P 		134
avr 136.7
(1.1) 		117.4
(-0) 		67
(-3) 		72.8
(-2.7) 		121.4
(0.2) 		168.6
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20422
Sequence Type Exemplar sequence
Representative Public ID CEK039E6R NCBI
Target Description CEK039E6R_rc /REP_DB=TREMBL Accession /GB=D34006 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182082 NCBI Caenorhabditis elegans C36B1.8b (C36B1.8) mRNA, complete cds. 11/11 None
C36B1.8b ENSEMBL cdna:known chromosome:CEL140:I:8745197:8750655:1 gene:C36B1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172682 2 1 NM_182082 174728_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8750078-8750576(+) 100.0 100.0
Public Domain and Genome References
Ensembl C36B1.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56562 Hypothetical protein C36B1.8b [Caenorhabditis elegans] ref|NP_871882.2| C36B1.8b [Caenorhabditis elegans] 0.0
blast CAB02273 Hypothetical protein C36B1.8a [Caenorhabditis elegans] ref|NP_492365.3| C36B1.8a [Caenorhabditis elegans] 0.0
blast CAE66963 Hypothetical protein CBG12357 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:174728_AT
aacgctcacacattttaattttcatcgacacgtgtattattgaatttctctgatccatca
catcccgattgccatcatcatccttaaagcgacattttctcgttaggtacgtacacgtgg
tacaacttcgtttaaactataacaaattatcactgaagtctcgaaaaacgttctctttct
cttcataattcacaagccaagaccacctgattagttttattcaattttttctgttttcta
tatttcaaaatgctggtcatttctctctttcgtttaggtattcacttttttaatttatac
atatttttgtttatatatacatatatctttttgaccaccccgtcttccaccttcaagaat
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCTCACACATTTTAATTTTCAT 24 147 47 Antisense
TGAATTTCTCTGATCCATCACATCC 199 577 87 Antisense
TTGCCATCATCATCCTTAAAGCGAC 647 701 115 Antisense
AGCGACATTTTCTCGTTAGGTACGT 665 1 134 Antisense
GGTACGTACACGTGGTACAACTTCG 340 413 152 Antisense
GTCTCGAAAAACGTTCTCTTTCTCT 61 471 204 Antisense
TTCTCTTTCTCTTCATAATTCACAA 234 693 217 Antisense
CACAAGCCAAGACCACCTGATTAGT 635 193 237 Antisense
TCATTTCTCTCTTTCGTTTAGGTAT 595 619 303 Antisense
TACATATATCTTTTTGACCACCCCG 230 645 364 Antisense
CCCGTCTTCCACCTTCAAGAATAAT 610 259 385 Antisense
Sequence Source Affymetrix Proprietary Database