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[174724_at]

Description CEK044H2R_rc /REP_DB=TREMBL Accession /GB=D34360 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 04      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 504
1 2 3 4 range
A 897.3
(3)
P 		457.9
(-2.8)
P 		441.6
(-3)
P 		551.2
(-1.6)
P 		456
B 902.4
(3)
P 		404.5
(-2.9)
P 		398.2
(-3)
P 		558.5
(-1.1)
P 		504
C 893.5
(3)
P 		479.3
(-2.3)
P 		422
(-3)
P 		752
(1.2)
P 		472
avr 897.7
(3) 		447.2
(-2.7) 		420.6
(-3) 		620.6
(-0.5) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 559
1 2 3 4 5 6 range
A 746.9
(3)
P 		600.8
(0.8)
P 		616.6
(1)
P 		469.4
(-1.2)
P 		502.2
(-0.7)
P 		349.7
(-3)
P 		397
B 908.8
(3)
P 		768.2
(1.2)
P 		551.6
(-1.5)
P 		480.1
(-2.4)
P 		429.4
(-3)
P 		437.4
(-2.9)
P 		479
C 755.4
(2)
P 		829.1
(3)
P 		473.1
(-1.6)
P 		453.8
(-1.8)
P 		497.3
(-1.3)
P 		364.2
(-3)
P 		465
avr 803.7
(3) 		732.7
(2) 		547.1
(-0.7) 		467.8
(-1.8) 		476.3
(-1.7) 		383.8
(-3) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 326.7
(3)
P 		99.4
(-2.5)
P 		115.4
(-2.2)
P 		80.7
(-3)
P 		246
B 287.8
(3)
P 		99.9
(-2.8)
P 		92.3
(-3)
P 		119
(-2.2)
P 		196
C 295.8
(3)
P 		137.8
(-2.6)
P 		147.1
(-2.3)
P 		126.8
(-3)
P 		169
avr 303.4
(3) 		112.4
(-2.9) 		118.3
(-2.7) 		108.8
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 137.7
(-0.5)
P 		213.7
(3)
P 		134.3
(-0.7)
P 		119.1
(-1.4)
P 		151.5
(0.1)
P 		85.2
(-3)
P 		129
B 316.2
(3)
P 		255.7
(1.1)
P 		133.9
(-2.8)
P 		127.1
(-3)
P 		174.5
(-1.5)
P 		163.1
(-1.9)
P 		189
C 280
(3)
P 		253
(2.1)
P 		120.4
(-2.1)
P 		91.3
(-3)
P 		160.9
(-0.8)
P 		121.9
(-2)
P 		189
avr 244.6
(3) 		240.8
(2.8) 		129.5
(-2.2) 		112.5
(-3) 		162.3
(-0.7) 		123.4
(-2.5) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20512
Sequence Type Exemplar sequence
Representative Public ID CEK044H2R NCBI
Target Description CEK044H2R_rc /REP_DB=TREMBL Accession /GB=D34360 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027176 NCBI Caenorhabditis elegans T13H5.1b (T13H5.1) mRNA, complete cds. 11/11 None
T13H5.1b ENSEMBL cdna:known chromosome:CEL140:II:8487502:8505449:-1 gene:T13H5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027175 1/11 Cross Hyb Matching Probes None
SNAP00000015533 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015543 1/11 Cross Hyb Matching Probes None
T13H5.1a 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174359 2 1 NM_001027176 174724_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8487508-8487900(-) 100.0 100.0
Public Domain and Genome References
Ensembl T13H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10782 Hypothetical protein T13H5.1b [Caenorhabditis elegans] emb|CAH04723.1| Hypothetical protein T13H5.1b [Caenorhabditis elegans] ref|NP_001022347.1| T13H5.1b [Caenorhabditis elegans] 0.0
blast CAA91422 Hypothetical protein T13H5.1a [Caenorhabditis elegans] emb|CAA91417.3| Hypothetical protein T13H5.1a [Caenorhabditis elegans] ref|NP_001022346.1| T13H5.1a [Caenorhabditis elegans] 0.0
blast CAE57628 Hypothetical protein CBG00613 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.5E-86
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.8E-59
Sequence
Target Sequence 
>C. ELEGANS:174724_AT
cgcggtagatcaacgtgtgaacagcaattgattcagctcgttttttcgagaatattcaat
tcttaattcagttccttcaacgggtcgttctatttcactcaacaattgttttctgataga
ttttattttgtttgtaaaatattaatatttctaaatatagacgttttccatttcttcccc
tctcaccctttcagtacagaatggttccacttttcacacaacattaatacatatcaaaaa
ttattgttctatgtatgcatatattttttctgtgtattctctttgataagcctttctggt
tgtttatcaaatcaatgctttcagttcttttcactcttaatttttcctgcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGGTAGATCAACGTGTGAACAGC 444 255 17 Antisense
GCAATTGATTCAGCTCGTTTTTTCG 49 323 40 Antisense
AATTCTTAATTCAGTTCCTTCAACG 285 175 74 Antisense
TCCTTCAACGGGTCGTTCTATTTCA 55 593 89 Antisense
TAAATATAGACGTTTTCCATTTCTT 406 641 168 Antisense
AATGGTTCCACTTTTCACACAACAT 158 163 216 Antisense
ATTTTTTCTGTGTATTCTCTTTGAT 476 15 279 Antisense
ATTCTCTTTGATAAGCCTTTCTGGT 655 9 292 Antisense
TAAGCCTTTCTGGTTGTTTATCAAA 150 637 303 Antisense
CAATGCTTTCAGTTCTTTTCACTCT 305 183 329 Antisense
TTCACTCTTAATTTTTCCTGCAGCT 387 687 346 Antisense
Sequence Source Affymetrix Proprietary Database