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[174723_at]

Description CEK032B9R_rc /REP_DB=TREMBL Accession /GB=D33518 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 12      6grp_total > 23      4grp_total > 53      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2242
1 2 3 4 range
A 2390.2
(3)
P 		2139
(2.2)
P 		1526.4
(0.3)
P 		495.5
(-3)
P 		1895
B 2588.7
(3)
P 		1808.6
(0.9)
P 		1617.3
(0.4)
P 		347.2
(-3)
P 		2242
C 2059.7
(3)
P 		1924.6
(2.5)
P 		1509.7
(0.9)
P 		514.1
(-3)
P 		1546
avr 2346.2
(3) 		1957.4
(1.8) 		1551.1
(0.5) 		452.3
(-3) 		1894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1997
1 2 3 4 5 6 range
A 2664.1
(3)
P 		1975.7
(0.9)
P 		2088.5
(1.3)
P 		1802.8
(0.4)
P 		1433.5
(-0.7)
P 		667.1
(-3)
P 		1997
B 2515.2
(3)
P 		2084.9
(1.5)
P 		2144.4
(1.7)
P 		2063.7
(1.4)
P 		1188.2
(-1.8)
P 		840.4
(-3)
P 		1675
C 2133.1
(2.4)
P 		1909.8
(1.6)
P 		2290.8
(3)
P 		2203.1
(2.7)
P 		1269.9
(-0.8)
P 		698.9
(-3)
P 		1592
avr 2437.5
(3) 		1990.1
(1.4) 		2174.6
(2.1) 		2023.2
(1.5) 		1297.2
(-1) 		735.5
(-3) 		1702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 798
1 2 3 4 range
A 870.3
(3)
P 		464.3
(-0.1)
P 		399
(-0.5)
P 		72.5
(-3)
P 		798
B 825.5
(3)
P 		446.7
(-0)
P 		374.8
(-0.6)
P 		74
(-3)
P 		752
C 681.8
(3)
P 		553.3
(1.7)
P 		526.2
(1.4)
P 		86.7
(-3)
P 		595
avr 792.5
(3) 		488.1
(0.4) 		433.3
(-0) 		77.7
(-3) 		715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 491.1
(0.7)
P 		702.7
(3)
P 		454.8
(0.2)
P 		457.2
(0.3)
P 		432.6
(0)
P 		162.4
(-3)
P 		540
B 875.2
(3)
P 		694
(1.1)
P 		520.7
(-0.8)
P 		546.6
(-0.5)
P 		482.8
(-1.2)
P 		313.4
(-3)
P 		562
C 790.6
(3)
P 		582.7
(0.8)
P 		583
(0.8)
P 		443
(-0.7)
P 		410.9
(-1.1)
P 		234
(-3)
P 		557
avr 719
(3) 		659.8
(2.3) 		519.5
(0.5) 		482.3
(0.1) 		442.1
(-0.4) 		236.6
(-3) 		482
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22205
Sequence Type Exemplar sequence
Representative Public ID CEK032B9R NCBI
Target Description CEK032B9R_rc /REP_DB=TREMBL Accession /GB=D33518 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029361 NCBI Caenorhabditis elegans ADAMTS family member (adt-2) (adt-2) mRNA, complete cds. 11/11 None
F08C6.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:7585529:7595281:1 gene:F08C6.1 11/11 None
F08C6.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:7586052:7595331:1 gene:F08C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181022 3 1 NM_001029361 174723_at (11), 189243_at (11)
NM_001029363 189243_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7594837-7595270(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68721 Adamts family protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024532.1| ADAMTS family member (adt-2) [Caenorhabditis elegans] 0.0
blast BAC41253.1 ADAMTS-like protease [Caenorhabditis elegans] 0.0
blast AAP40541 Adamts family protein 2, isoform c [Caenorhabditis elegans] ref|NP_001024534.1| ADAMTS family member (adt-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 8.6E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.5E-12
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.4E-13
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 9.5E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.7E-10
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 3.4E-11
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 7.6E-13
Sequence
Target Sequence 
>C. ELEGANS:174723_AT
ccatctatcacctttccatgtaaatacaacatccttcatttgtcgttgctcatttgcttt
gtctcctcttcctgaacctgatcccttttagttatctatgtcacgttacttgcaatcggt
acttttcatcattccttccaatcatcatcatcgttttattttttttttgctgtttctttt
cacttattttttgtcgagatataggtattgttccctgagtgttctacttgttagaccatc
actggtcgcctcataactacgggttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTATCACCTTTCCATGTAAAT 382 271 61 Antisense
CCATGTAAATACAACATCCTTCATT 613 271 76 Antisense
CTTCATTTGTCGTTGCTCATTTGCT 419 221 94 Antisense
TTGTCGTTGCTCATTTGCTTTGTCT 698 707 100 Antisense
CCTGAACCTGATCCCTTTTAGTTAT 198 265 131 Antisense
GAACCTGATCCCTTTTAGTTATCTA 362 345 134 Antisense
GAGATATAGGTATTGTTCCCTGAGT 148 391 256 Antisense
TTCCCTGAGTGTTCTACTTGTTAGA 180 697 271 Antisense
GTTCTACTTGTTAGACCATCACTGG 535 443 281 Antisense
TTAGACCATCACTGGTCGCCTCATA 669 681 291 Antisense
GTCGCCTCATAACTACGGGTTTTGA 587 475 305 Antisense
Sequence Source Affymetrix Proprietary Database