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[174722_at]

Description CEK027A4R_rc /REP_DB=TREMBL Accession /GB=D33158 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 20      6grp_total > 28      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1272
1 2 3 4 range
A 947.9
(2.3)
P 		519.5
(-3)
P 		724.9
(-0.5)
P 		1005.6
(3)
P 		486
B 1094.3
(-2.2)
P 		980.4
(-3)
P 		1455.2
(0.5)
P 		1791.6
(3)
P 		811
C 1071.7
(-3)
P 		1176.2
(1.7)
P 		1192
(2.5)
P 		1204
(3)
P 		132
avr 1038
(-1) 		892
(-3) 		1124
(0.2) 		1333.7
(3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1316
1 2 3 4 5 6 range
A 1794.1
(3)
P 		878
(-2)
P 		954.3
(-1.6)
P 		690.7
(-3)
P 		1164.4
(-0.4)
P 		1124.8
(-0.6)
P 		1103
B 1352.5
(3)
P 		920.7
(0)
P 		478.5
(-3)
P 		766.5
(-1)
P 		824.1
(-0.6)
P 		915.6
(0)
P 		874
C 1634.1
(3)
P 		803.8
(-1.6)
P 		685.7
(-2.3)
P 		556.2
(-3)
P 		1018.2
(-0.4)
P 		1107
(0.1)
P 		1078
avr 1593.6
(3) 		867.5
(-1.7) 		706.2
(-2.8) 		671.1
(-3) 		1002.2
(-0.8) 		1049.1
(-0.5) 		923
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 345.1
(3)
P 		112.8
(-3)
P 		189.5
(-1)
P 		147.2
(-2.1)
P 		232
B 349
(1.6)
P 		242.1
(-3)
P 		337.2
(1.1)
P 		381.8
(3)
P 		140
C 354.8
(1.3)
P 		338.2
(0.8)
P 		415.4
(3)
P 		203
(-3)
P 		212
avr 349.6
(3) 		231
(-3) 		314
(1.2) 		244
(-2.3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 330.7
(2.3)
P 		312.3
(1.7)
P 		207.8
(-1.9)
P 		175.2
(-3)
P 		351.4
(3)
P 		273.8
(0.4)
P 		176
B 470.6
(3)
P 		306.5
(0.2)
P 		116.2
(-3)
P 		203
(-1.5)
P 		334.8
(0.7)
P 		341.4
(0.8)
P 		354
C 605.7
(3)
P 		245.3
(-1.4)
P 		174.5
(-2.2)
P 		111.9
(-3)
P 		329.5
(-0.4)
P 		370.6
(0.1)
P 		494
avr 469
(3) 		288
(-0.6) 		166.2
(-2.9) 		163.4
(-3) 		338.6
(0.4) 		328.6
(0.2) 		306
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21208
Sequence Type Exemplar sequence
Representative Public ID CEK027A4R NCBI
Target Description CEK027A4R_rc /REP_DB=TREMBL Accession /GB=D33158 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171882 NCBI Caenorhabditis elegans F56C9.10b (F56C9.10) mRNA, complete cds. 11/11 None
F56C9.10b.2 ENSEMBL cdna:known chromosome:CEL140:III:7329180:7335039:-1 gene:F56C9.10 11/11 A 
F56C9.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:7329642:7335039:-1 gene:F56C9.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176040 2 1 NM_171882 174722_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7329662-7330035(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56C9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48535 Hypothetical protein F56C9.10b [Caenorhabditis elegans] ref|NP_741223.1| F56C9.10b [Caenorhabditis elegans] 0.0
blast AAK18965 Hypothetical protein F56C9.10a [Caenorhabditis elegans] ref|NP_741222.1| F56C9.10a [Caenorhabditis elegans] 0.0
blast CAE57618 Hypothetical protein CBG00600 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174722_AT
tgccttttccccatttattaatcaggtttcttttaattcaattttcaatcattcaaactt
ctcaaaaacttcccactgaaaacatgtgaaaatccacaaaaaaatattacggtcctactt
ttttaaaattcaaatttcgctgtaattttaacctcacttttcttgaaatatgtgtaaaat
ttccttttctgagtattttcccattatttgtataatttttggaactttatctagaatatt
tcatgtttcattaagaaattaccaattcagtttcactgaactagattcccctagactttt
atcgtccttatccatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTTTTCCCCATTTATTAATCAG 253 583 29 Antisense
TAATCAGGTTTCTTTTAATTCAATT 234 627 47 Antisense
AAAACTTCCCACTGAAAACATGTGA 143 131 93 Antisense
ATTTCGCTGTAATTTTAACCTCACT 623 13 162 Antisense
TTTAACCTCACTTTTCTTGAAATAT 646 671 175 Antisense
TTTCCTTTTCTGAGTATTTTCCCAT 393 667 208 Antisense
GAGTATTTTCCCATTATTTGTATAA 502 397 219 Antisense
GAAATTACCAATTCAGTTTCACTGA 585 363 283 Antisense
AGTTTCACTGAACTAGATTCCCCTA 471 63 297 Antisense
TAGATTCCCCTAGACTTTTATCGTC 340 639 310 Antisense
GACTTTTATCGTCCTTATCCATTTC 587 371 322 Antisense
Sequence Source Affymetrix Proprietary Database