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[174718_at]

Description CEK060E1R_rc /REP_DB=TREMBL Accession /GB=D70997 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk60e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 261.9
(3)
P 		184.5
(-0.5)
P 		127.8
(-3)
P 		177.4
(-0.8)
P 		134
B 236
(2.9)
P 		142.2
(-2.8)
P 		138.9
(-3)
P 		236.9
(3)
P 		98
C 249.8
(3)
P 		163.5
(-1.1)
P 		122.8
(-3)
P 		214.8
(1.3)
P 		127
avr 249.2
(3) 		163.4
(-1.3) 		129.8
(-3) 		209.7
(1) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 186.9
(-1)
P 		195.3
(-0.3)
P 		180.1
(-1.6)
P 		162.7
(-3)
P 		235.6
(3)
P 		169.6
(-2.4)
P 		73
B 290.5
(3)
P 		221.7
(1.1)
P 		76.1
(-3)
P 		219.6
(1)
P 		190
(0.2)
P 		163.9
(-0.5)
P 		214
C 219
(2.1)
P 		234.1
(3)
P 		165.4
(-1.1)
P 		197.6
(0.8)
P 		193.9
(0.6)
P 		134.2
(-3)
P 		100
avr 232.1
(3) 		217
(2) 		140.5
(-3) 		193.3
(0.5) 		206.5
(1.3) 		155.9
(-2) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 95.4
(3)
P 		40.1
(-1.8)
P 		33.4
(-2.4)
P 		26
(-3)
P 		69
B 75.3
(3)
P 		35.1
(-2.6)
P 		32.2
(-3)
P 		50.5
(-0.5)
P 		43
C 82.7
(3)
P 		47
(-1.6)
P 		42.8
(-2.1)
P 		36.2
(-3)
P 		47
avr 84.5
(3) 		40.7
(-2.4) 		36.1
(-3) 		37.6
(-2.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 34.5
(-3)
P 		69.4
(2.7)
P 		39.2
(-2.2)
P 		41.3
(-1.9)
P 		71.1
(3)
P 		41.3
(-1.9)
P 		37
B 101.1
(3)
P 		73.8
(1)
P 		18.5
(-3)
P 		58.2
(-0.1)
P 		77.2
(1.3)
P 		61.1
(0.1)
P 		83
C 81.2
(3)
P 		71.4
(1.6)
P 		42.1
(-2.7)
P 		39.7
(-3)
P 		62.8
(0.3)
P 		44.9
(-2.2)
P 		42
avr 72.3
(3) 		71.5
(2.9) 		33.3
(-3) 		46.4
(-1) 		70.4
(2.7) 		49.1
(-0.6) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22253
Sequence Type Exemplar sequence
Representative Public ID CEK060E1R NCBI
Target Description CEK060E1R_rc /REP_DB=TREMBL Accession /GB=D70997 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk60e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077339 NCBI Caenorhabditis elegans F46F6.1b (F46F6.1) mRNA, complete cds. 11/11 None
F46F6.1b ENSEMBL cdna:known chromosome:CEL140:X:10373168:10374766:-1 gene:F46F6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
185870 2 1 NM_077339 174718_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10373177-10373523(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46F6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21521 Hypothetical protein F46F6.1b [Caenorhabditis elegans] ref|NP_509740.1| F46F6.1b [Caenorhabditis elegans] 4.0E-75
blast CAA90338 Hypothetical protein F46F6.1a [Caenorhabditis elegans] emb|CAA21522.1| Hypothetical protein F46F6.1a [Caenorhabditis elegans] ref|NP_509739.1| F46F6.1a [Caenorhabditis elegans] 1.0E-63
blast CAE70572 Hypothetical protein CBG17226 [Caenorhabditis briggsae] 9.0E-25
Sequence
Target Sequence 
>C. ELEGANS:174718_AT
ttgagtttctatggctagagtcgtatggttactttcataaatttaacccatttctttccc
ccttcccactagtcaaattattttgtttttccatattctcatattttttaatcgtttgtt
ccttgtactcctgcgagactgaagtcacaacgataattcagtcattttattcattttgtt
taagtatatatttttcaaaaatccaaaggaacttgtcaaatcaaattgtcatcgaatgcc
ggcattctaactttttcttgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGTTTCTATGGCTAGAGTCGTA 542 705 60 Antisense
GCTAGAGTCGTATGGTTACTTTCAT 148 301 73 Antisense
CCTTCCCACTAGTCAAATTATTTTG 501 267 120 Antisense
TTAATCGTTTGTTCCTTGTACTCCT 285 683 167 Antisense
TTCCTTGTACTCCTGCGAGACTGAA 252 701 178 Antisense
GTACTCCTGCGAGACTGAAGTCACA 512 459 184 Antisense
AAGTCACAACGATAATTCAGTCATT 136 151 201 Antisense
AAATCCAAAGGAACTTGTCAAATCA 532 117 258 Antisense
CAAATTGTCATCGAATGCCGGCATT 20 195 281 Antisense
GAATGCCGGCATTCTAACTTTTTCT 699 329 293 Antisense
GGCATTCTAACTTTTTCTTGTCAAA 416 537 300 Antisense
Sequence Source Affymetrix Proprietary Database