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[174717_at]

Description CEK033E6R_rc /REP_DB=TREMBL Accession /GB=D33610 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 76      6grp_total > 48      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 681
1 2 3 4 range
A 1199.2
(3)
P 		937.9
(-0.8)
P 		788.5
(-3)
P 		1200.7
(3)
P 		412
B 1320.8
(3)
P 		720.4
(-2.5)
P 		667
(-3)
P 		1122.8
(1.2)
P 		654
C 1089.7
(3)
P 		640.3
(-3)
P 		827.9
(-0.5)
P 		1022
(2.1)
P 		449
avr 1203.2
(3) 		766.2
(-2.9) 		761.1
(-3) 		1115.2
(1.8) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 870
1 2 3 4 5 6 range
A 1628.4
(3)
P 		1108.2
(-0.7)
P 		786.7
(-3)
P 		823.7
(-2.7)
P 		1154.9
(-0.4)
P 		1194.4
(-0.1)
P 		842
B 1208.9
(1.5)
P 		1067.7
(-0.1)
P 		825.1
(-2.9)
P 		1125.9
(0.5)
P 		816.5
(-3)
P 		1343.3
(3)
P 		527
C 1122.5
(1.5)
P 		1193.5
(2.3)
P 		1020.8
(0.2)
P 		1111.1
(1.3)
P 		758.4
(-3)
P 		1249.2
(3)
P 		491
avr 1319.9
(3) 		1123.1
(0.3) 		877.5
(-3) 		1020.2
(-1.1) 		909.9
(-2.6) 		1262.3
(2.2) 		442
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 436.6
(3)
P 		203.6
(-2.4)
P 		206.1
(-2.3)
P 		175.8
(-3)
P 		261
B 421.2
(3)
P 		177.9
(-2.5)
P 		154.6
(-3)
P 		239.3
(-1.1)
P 		267
C 360.7
(3)
P 		184.1
(-2.6)
P 		288.6
(0.7)
P 		172.3
(-3)
P 		188
avr 406.2
(3) 		188.5
(-3) 		216.4
(-2.2) 		195.8
(-2.8) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 300.2
(0.5)
P 		394.1
(3)
P 		171.3
(-3)
P 		208.9
(-2)
P 		348.5
(1.8)
P 		290.8
(0.2)
P 		223
B 420.7
(1.4)
P 		355.4
(0.1)
P 		200.4
(-3)
P 		298.2
(-1)
P 		331.7
(-0.4)
P 		500.9
(3)
P 		301
C 416
(2.9)
P 		364.2
(1.3)
P 		259.8
(-1.9)
P 		223.4
(-3)
P 		245.4
(-2.3)
P 		418.2
(3)
P 		195
avr 379
(2.2) 		371.2
(2) 		210.5
(-3) 		243.5
(-2) 		308.5
(0) 		403.3
(3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20411
Sequence Type Exemplar sequence
Representative Public ID CEK033E6R NCBI
Target Description CEK033E6R_rc /REP_DB=TREMBL Accession /GB=D33610 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026217 NCBI Caenorhabditis elegans F16A11.3a (F16A11.3) mRNA, complete cds. 11/11 None
F16A11.3a ENSEMBL cdna:known chromosome:CEL140:I:9372297:9397708:-1 gene:F16A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172761 3 1 NM_001026217 174717_at (11), 193440_s_at (11)
NM_001026218 193440_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9372237-9372622(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10801 Hypothetical protein F16A11.3a [Caenorhabditis elegans] emb|CAH10794.1| Hypothetical protein F16A11.3a [Caenorhabditis elegans] ref|NP_001021388.1| F16A11.3a [Caenorhabditis elegans] 0.0
blast T23714 hypothetical protein M04C9.6a - Caenorhabditis elegans 0.0
blast CAH10800 Hypothetical protein F16A11.3c [Caenorhabditis elegans] emb|CAH10793.1| Hypothetical protein F16A11.3c [Caenorhabditis elegans] ref|NP_001021390.1| F16A11.3c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:174717_AT
atgtgatcgctggccgatcttttcccattaaaatactttttttctaggtttcttgtgtaa
ttgtcccgtttttttcttggaatttttagaattttatgtgtggtatttattactagagta
tcaatttcaattatttcagttttccatccccatttattccatttttcttggtcatactta
aactccgctgttgacagctccttttatccactttcttcccattttcttctccccgcccac
aatttctcacactcggttttcatgtttcacttaattgtgcgtgctctgccctcttacttc
atttattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGATCGCTGGCCGATCTTTTCC 585 49 56 Antisense
TGGCCGATCTTTTCCCATTAAAATA 77 543 66 Antisense
TAGGTTTCTTGTGTAATTGTCCCGT 47 653 100 Antisense
TCAATTATTTCAGTTTTCCATCCCC 8 635 182 Antisense
ATTCCATTTTTCTTGGTCATACTTA 180 9 211 Antisense
GGTCATACTTAAACTCCGCTGTTGA 661 503 225 Antisense
CCGCTGTTGACAGCTCCTTTTATCC 520 261 240 Antisense
AATTTCTCACACTCGGTTTTCATGT 543 173 296 Antisense
CACTCGGTTTTCATGTTTCACTTAA 29 197 305 Antisense
TCACTTAATTGTGCGTGCTCTGCCC 553 625 322 Antisense
CTGCCCTCTTACTTCATTTATTGAT 136 237 341 Antisense
Sequence Source Affymetrix Proprietary Database