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[174716_at]

Description CEK058H8R_rc /REP_DB=TREMBL Accession /GB=D65548 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58h8 : 3prime end, single read.
Cluster 6grp_total > 83      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 25
(3)
A 		8.1
(-3)
A 		13.7
(-1)
A 		13.9
(-0.9)
A 		17
B 27
(-1.6)
A 		79.8
(3)
A 		52.8
(0.6)
A 		11.1
(-3)
A 		69
C 61.2
(2.3)
A 		35.7
(-3)
A 		64.8
(3)
A 		64.7
(3)
A 		29
avr 37.7
(0.4) 		41.2
(1.9) 		43.8
(3) 		29.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 21.5
(-2.1)
A 		12.6
(-3)
A 		19.2
(-2.3)
A 		15.1
(-2.8)
A 		72.6
(3)
A 		37.8
(-0.5)
A 		60
B 38.1
(1.8)
A 		17
(-1.4)
A 		27.4
(0.2)
A 		43.2
(2.6)
A 		45.9
(3)
A 		6.5
(-3)
A 		39
C 9.9
(-3)
A 		34
(0.3)
A 		47.2
(2.2)
A 		53.1
(3)
A 		16.2
(-2.1)
A 		32.1
(0.1)
A 		43
avr 23.2
(-2.5) 		21.2
(-3) 		31.3
(-0.4) 		37.1
(1) 		44.9
(3) 		25.5
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 9.1
(3)
A 		1.8
(-3)
A 		3.6
(-1.5)
A 		2
(-2.8)
A 		7
B 8.6
(-0.8)
A 		19.7
(3)
A 		12.2
(0.4)
A 		2.4
(-3)
A 		17
C 20.3
(1.9)
A 		10.3
(-3)
A 		22.6
(3)
A 		10.9
(-2.7)
A 		12
avr 12.7
(2.9) 		10.6
(1.3) 		12.8
(3) 		5.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4
(-2.9)
A 		4.5
(-2.8)
A 		4.2
(-2.9)
A 		3.8
(-3)
A 		21.9
(3)
A 		9.2
(-1.2)
A 		18
B 13.3
(1)
A 		5.6
(-1.8)
A 		6.6
(-1.5)
A 		11.4
(0.3)
A 		18.7
(3)
A 		2.4
(-3)
A 		16
C 3.7
(-3)
A 		10.4
(1.8)
A 		12
(3)
A 		10.7
(2.1)
A 		5.2
(-1.9)
A 		10.7
(2.1)
A 		8
avr 7
(-2.9) 		6.8
(-3) 		7.6
(-2.4) 		8.6
(-1.7) 		15.3
(3) 		7.4
(-2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21761
Sequence Type Exemplar sequence
Representative Public ID CEK058H8R NCBI
Target Description CEK058H8R_rc /REP_DB=TREMBL Accession /GB=D65548 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171500 NCBI Caenorhabditis elegans B0222.10 (B0222.10) mRNA, complete cds. 11/11 None
B0222.10 ENSEMBL cdna:known chromosome:CEL140:V:9160969:9162123:1 gene:B0222.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9161787-9162114(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0222.10
Entrez Gene 179295 Entrez gene
SwissProt Q8WQH1 EMBL-EBI
WormBase CE30121 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL65771 Hypothetical protein B0222.10 [Caenorhabditis elegans] ref|NP_741585.1| B0222.10 [Caenorhabditis elegans] 2.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741585.1 1 60-82
B0222.10 1 60-82
Sequence
Target Sequence 
>C. ELEGANS:174716_AT
tccactactacatgcagcttctgttatcaggattttcgacatacacattaatttatttaa
taatttcgtgacttttttgttagtaattttcctctacattttcttaatttattatgttac
cttcttcgtcttccctttcggtcccctccgagtgtcgcattggatgcgattcttcaaaat
tattatttcccgttcccatcttggttgactcacaaattttatgttcccattcccatacat
atttttattaccatattcccctgagtagttatttttcttccttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTACTACATGCAGCTTCTGTT 129 589 14 Antisense
GCAGCTTCTGTTATCAGGATTTTCG 139 313 27 Antisense
ATCAGGATTTTCGACATACACATTA 501 29 39 Antisense
TGTTAGTAATTTTCCTCTACATTTT 383 559 91 Antisense
TTATTATGTTACCTTCTTCGTCTTC 76 679 122 Antisense
CCCTCCGAGTGTCGCATTGGATGCG 635 259 157 Antisense
GTTCCCATCTTGGTTGACTCACAAA 636 441 205 Antisense
ACAAATTTTATGTTCCCATTCCCAT 23 111 225 Antisense
TTCCCATTCCCATACATATTTTTAT 371 697 237 Antisense
TTTTTATTACCATATTCCCCTGAGT 702 665 255 Antisense
TGAGTAGTTATTTTTCTTCCTTGTC 513 567 275 Antisense
Sequence Source Affymetrix Proprietary Database