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[174715_at]

Description CEK024D7R_rc /REP_DB=TREMBL Accession /GB=D32983 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 89      6grp_total > 97      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2225
1 2 3 4 range
A 719.9
(-3)
P 		795.9
(-2.7)
P 		704.2
(-3)
P 		2765.2
(3)
P 		2061
B 757.3
(-3)
P 		777.7
(-2.9)
P 		749.8
(-3)
P 		2918.5
(3)
P 		2169
C 693.8
(-3)
P 		871.9
(-2.5)
P 		798
(-2.7)
P 		2810.4
(3)
P 		2117
avr 723.7
(-3) 		815.2
(-2.7) 		750.7
(-2.9) 		2831.4
(3) 		2108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1323
1 2 3 4 5 6 range
A 873.1
(-3)
P 		949.3
(-2.6)
P 		873.8
(-3)
P 		1232.5
(-1.3)
P 		1800.4
(1.4)
P 		2139.3
(3)
P 		1266
B 816.4
(-3)
P 		849.5
(-2.8)
P 		830
(-2.9)
P 		1354.1
(-0.4)
P 		1537
(0.4)
P 		2076.6
(3)
P 		1260
C 864.7
(-2.9)
P 		839.5
(-3)
P 		1073
(-1.8)
P 		1185
(-1.3)
P 		1534.1
(0.4)
P 		2055.3
(3)
P 		1216
avr 851.4
(-3) 		879.4
(-2.9) 		925.6
(-2.6) 		1257.2
(-1) 		1623.8
(0.7) 		2090.4
(3) 		1239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 262.1
(-0.7)
P 		172.8
(-3)
P 		184.1
(-2.7)
P 		404.8
(3)
P 		232
B 241.5
(-2.1)
P 		192.1
(-2.8)
P 		173.8
(-3)
P 		621.9
(3)
P 		448
C 229.7
(-3)
P 		250.7
(-2.5)
P 		278.1
(-1.8)
P 		473.9
(3)
P 		244
avr 244.4
(-2.2) 		205.2
(-3) 		212
(-2.9) 		500.2
(3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 160.9
(-3)
P 		337.6
(-0.2)
P 		190.3
(-2.5)
P 		312.6
(-0.6)
P 		543.3
(3)
P 		520.9
(2.6)
P 		382
B 284.1
(-2.1)
P 		282.8
(-2.1)
P 		201.5
(-3)
P 		358.7
(-1.4)
P 		624.5
(1.4)
P 		774.4
(3)
P 		573
C 320.5
(-1.9)
P 		256.1
(-2.8)
P 		273.1
(-2.5)
P 		238.3
(-3)
P 		496.4
(0.4)
P 		688
(3)
P 		450
avr 255.2
(-2.5) 		292.2
(-2) 		221.6
(-3) 		303.2
(-1.9) 		554.7
(1.5) 		661.1
(3) 		440
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20564
Sequence Type Exemplar sequence
Representative Public ID CEK024D7R NCBI
Target Description CEK024D7R_rc /REP_DB=TREMBL Accession /GB=D32983 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063754 NCBI Caenorhabditis elegans R53.7a (R53.7) mRNA, complete cds. 11/11 None
R53.7a.1 ENSEMBL cdna:known chromosome:CEL140:II:9970975:9974615:-1 gene:R53.7 11/11 A 
R53.7a.2 ENSEMBL cdna:known chromosome:CEL140:II:9970975:9974957:-1 gene:R53.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174556 2 1 NM_063754 174715_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9971046-9971248(-) 100.0 100.0
Public Domain and Genome References
Ensembl R53.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91351 Hypothetical protein R53.7a [Caenorhabditis elegans] ref|NP_496155.1| R53.7a [Caenorhabditis elegans] 0.0
blast CAD59154 Hypothetical protein R53.7b [Caenorhabditis elegans] ref|NP_871971.1| R53.7b [Caenorhabditis elegans] 0.0
blast CAE57935 Hypothetical protein CBG00989 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 2.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 7.9E-8
Pfam IPR000644 EMBL-EBI CBS domain 8.3E-12
Pfam IPR000644 EMBL-EBI CBS domain 0.0096
Sequence
Target Sequence 
>C. ELEGANS:174715_AT
ttttctcttcttacaacacctagagctttactgctacctcttggggataatttgtaaccc
caaatttcacttttcatgcctcctgacaaatcacatgcacttccataataatgtacttat
tttctcggtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCTTCTTACAACACCTAGAG 105 677 25 Antisense
ACACCTAGAGCTTTACTGCTACCTC 536 109 40 Antisense
CTAGAGCTTTACTGCTACCTCTTGG 199 225 44 Antisense
TTTACTGCTACCTCTTGGGGATAAT 304 673 51 Antisense
GCTACCTCTTGGGGATAATTTGTAA 151 301 57 Antisense
GTAACCCCAAATTTCACTTTTCATG 358 457 78 Antisense
ACTTTTCATGCCTCCTGACAAATCA 316 101 93 Antisense
GCCTCCTGACAAATCACATGCACTT 130 283 102 Antisense
GACAAATCACATGCACTTCCATAAT 377 365 109 Antisense
CATGCACTTCCATAATAATGTACTT 69 211 118 Antisense
TAATGTACTTATTTTCTCGGTTTCT 506 635 133 Antisense
Sequence Source Affymetrix Proprietary Database