[Home] | [Total List]

[174713_at]

Description CEK028B1R_rc /REP_DB=TREMBL Accession /GB=D33241 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 01      6grp_total > 18      4grp_total > 59      6grp_cgc > 02      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1501
1 2 3 4 range
A 2684.5
(2.1)
P 		2870.8
(3)
P 		2802.3
(2.7)
P 		1579.2
(-3)
P 		1292
B 2524.5
(-0.3)
P 		2649.2
(0.6)
P 		2982.1
(3)
P 		2148.4
(-3)
P 		834
C 2473.7
(0)
P 		2689.1
(1.1)
P 		3080.2
(3)
P 		1851.2
(-3)
P 		1229
avr 2560.9
(0.8) 		2736.4
(1.8) 		2954.9
(3) 		1859.6
(-3) 		1095

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1533
1 2 3 4 5 6 range
A 2792.2
(3)
P 		2096.4
(0.3)
P 		1259.1
(-3)
P 		1450.7
(-2.3)
P 		2141.5
(0.5)
P 		1717.6
(-1.2)
P 		1533
B 2603.5
(3)
P 		1883.5
(-0.6)
P 		1397.2
(-3)
P 		1906.8
(-0.5)
P 		1696.5
(-1.5)
P 		1809.4
(-0.9)
P 		1206
C 2622.5
(3)
P 		1786.6
(-1.1)
P 		1899.6
(-0.6)
P 		1628.6
(-1.9)
P 		1668.8
(-1.7)
P 		1405.6
(-3)
P 		1217
avr 2672.7
(3) 		1922.2
(-0.9) 		1518.6
(-3) 		1662
(-2.3) 		1835.6
(-1.4) 		1644.2
(-2.3) 		1154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 842
1 2 3 4 range
A 977.4
(3)
P 		623.2
(0.2)
P 		732.6
(1)
P 		231.2
(-3)
P 		746
B 805.1
(3)
P 		654.3
(0.4)
P 		691
(1)
P 		457.8
(-3)
P 		347
C 818.9
(1)
P 		773.1
(0.6)
P 		1073.5
(3)
P 		312.1
(-3)
P 		761
avr 867.1
(3) 		683.5
(0.9) 		832.4
(2.6) 		333.7
(-3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 514.7
(0.1)
P 		745.6
(3)
P 		274.2
(-3)
P 		367.9
(-1.8)
P 		646.2
(1.7)
P 		418.2
(-1.2)
P 		471
B 905.9
(3)
P 		626.9
(0)
P 		339.3
(-3)
P 		505
(-1.2)
P 		689.3
(0.7)
P 		674.7
(0.6)
P 		567
C 972.1
(3)
P 		545.1
(-1)
P 		483.5
(-1.5)
P 		327.5
(-3)
P 		540
(-1)
P 		470.5
(-1.7)
P 		645
avr 797.6
(3) 		639.2
(0.8) 		365.7
(-3) 		400.1
(-2.5) 		625.2
(0.6) 		521.1
(-0.8) 		432
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22321
Sequence Type Exemplar sequence
Representative Public ID CEK028B1R NCBI
Target Description CEK028B1R_rc /REP_DB=TREMBL Accession /GB=D33241 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078077 NCBI Caenorhabditis elegans Multidrug Resistance Protein family member (mrp-5) (mrp-5) mRNA, complete cds. 11/11 None
F14F4.3a ENSEMBL cdna:known chromosome:CEL140:X:14938429:14946233:-1 gene:F14F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181587 2 1 NM_078077 174713_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14938438-14938789(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14F4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54251 Hypothetical protein F14F4.3a [Caenorhabditis elegans] emb|CAB54226.1| Hypothetical protein F14F4.3a [Caenorhabditis elegans] ref|NP_510478.1| Multidrug Resistance Protein family member (mrp-5) [Caenorhabditis elegans] 0.0
blast CAB54250 Hypothetical protein F14F4.3b [Caenorhabditis elegans] emb|CAB54225.1| Hypothetical protein F14F4.3b [Caenorhabditis elegans] ref|NP_510479.1| Multidrug Resistance Protein family member (mrp-5) [Caenorhabditis elegans] 0.0
blast H89715 protein F14F4.3 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 6.2E-7
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 5.4E-21
Pfam IPR003439 EMBL-EBI ABC transporter 2.6E-23
Pfam IPR003439 EMBL-EBI ABC transporter 8.8E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510478.1 12 146-168,186-208,266-288,293-315,374-396,409-431,747-769,810-832,880-902,906-928,993-1015,1025-1043
F14F4.3a 12 146-168,186-208,266-288,293-315,374-396,409-431,747-769,810-832,880-902,906-928,993-1015,1025-1043
Sequence
Target Sequence 
>C. ELEGANS:174713_AT
atcccattgcttctaagattctcagttgttatcactaaaccgccctccattctcatcagt
catcatgttgtcactcttctaggtcccaaatatacaccctatctttttgaaacagggaca
atccacggtcacaacgaacttcttttctgacttgtcatactttctctcttacatgtttct
tttttcactcatcccaactcccacatgttctagtagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCATTGCTTCTAAGATTCTCAG 470 37 71 Antisense
TCAGTTGTTATCACTAAACCGCCCT 466 621 92 Antisense
CTCCATTCTCATCAGTCATCATGTT 438 235 115 Antisense
CAGTCATCATGTTGTCACTCTTCTA 584 207 127 Antisense
GTCACTCTTCTAGGTCCCAAATATA 337 465 140 Antisense
TCCCAAATATACACCCTATCTTTTT 307 597 154 Antisense
AACAGGGACAATCCACGGTCACAAC 68 137 181 Antisense
CGGTCACAACGAACTTCTTTTCTGA 73 241 196 Antisense
TTCTGACTTGTCATACTTTCTCTCT 36 695 215 Antisense
ACTTTCTCTCTTACATGTTTCTTTT 352 103 229 Antisense
CCAACTCCCACATGTTCTAGTAGAA 63 277 264 Antisense
Sequence Source Affymetrix Proprietary Database