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[174712_at]

Description CEK039A5R_rc /REP_DB=TREMBL Accession /GB=D33973 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 05      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 21      6grp_total > 05      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1187
1 2 3 4 range
A 1743
(3)
P 		997.5
(-0.8)
P 		1277.9
(0.6)
P 		573.9
(-3)
P 		1169
B 1718.5
(3)
P 		1243
(0.1)
P 		1237.9
(0.1)
P 		737.8
(-3)
P 		981
C 1551.2
(2.9)
P 		1393.3
(2)
P 		1564.4
(3)
P 		556
(-3)
P 		1008
avr 1670.9
(3) 		1211.3
(0.4) 		1360.1
(1.2) 		622.6
(-3) 		1048

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1315
1 2 3 4 5 6 range
A 1987.7
(3)
P 		1347
(0.1)
P 		761.7
(-2.6)
P 		904.2
(-1.9)
P 		1203.3
(-0.6)
P 		673.2
(-3)
P 		1315
B 1858.2
(3)
P 		1480.4
(1)
P 		1030.4
(-1.5)
P 		1255.2
(-0.3)
P 		1011.5
(-1.6)
P 		749.9
(-3)
P 		1108
C 1654.2
(3)
P 		1261.2
(0.3)
P 		1056.5
(-1.1)
P 		1003.3
(-1.5)
P 		1115.8
(-0.7)
P 		782.7
(-3)
P 		872
avr 1833.4
(3) 		1362.9
(0.4) 		949.5
(-1.8) 		1054.2
(-1.3) 		1110.2
(-1) 		735.3
(-3) 		1098
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 634.6
(3)
P 		216.5
(-1.6)
P 		334.1
(-0.3)
P 		84
(-3)
P 		551
B 548
(3)
P 		307
(-0.7)
P 		286.9
(-1)
P 		157.2
(-3)
P 		391
C 513.5
(2.6)
P 		400.6
(1.1)
P 		545.2
(3)
P 		93.8
(-3)
P 		451
avr 565.4
(3) 		308
(-0.4) 		388.7
(0.7) 		111.7
(-3) 		454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 366.4
(0.9)
P 		479.1
(3)
P 		165.9
(-3)
P 		229.3
(-1.8)
P 		363.1
(0.8)
P 		163.9
(-3)
P 		315
B 646.5
(3)
P 		492.8
(0.7)
P 		250.2
(-3)
P 		332.5
(-1.8)
P 		410.9
(-0.6)
P 		279.6
(-2.6)
P 		396
C 613.2
(3)
P 		384.8
(-0.3)
P 		268.9
(-2)
P 		201.8
(-3)
P 		361.1
(-0.7)
P 		262
(-2.1)
P 		411
avr 542
(3) 		452.2
(1.3) 		228.3
(-3) 		254.5
(-2.5) 		378.4
(-0.1) 		235.2
(-2.9) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21272
Sequence Type Exemplar sequence
Representative Public ID CEK039A5R NCBI
Target Description CEK039A5R_rc /REP_DB=TREMBL Accession /GB=D33973 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y57G11C.24a ENSEMBL cdna:known chromosome:CEL140:IV:14879452:14896646:1 gene:Y57G11C.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14896300-14896642(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y57G11C.24
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16527 Hypothetical protein Y57G11C.24a [Caenorhabditis elegans] ref|NP_502803.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAB16526 Hypothetical protein Y57G11C.24c [Caenorhabditis elegans] ref|NP_502802.2| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
blast CAE45095 Hypothetical protein Y57G11C.24d [Caenorhabditis elegans] ref|NP_001023521.1| EPS (human endocytosis) related family member (eps-8) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:174712_AT
aaattgccaaaatgcatgtttccttcctgtttttcgtacattatttgctcaaaaaatcat
cacttcacccaaaaaatttcgcgtttttcatttcaaaacccctattcccacacattcaac
attgtctcgtctttgtttcagttcacttttcccttcgataaatacaatttctcaatttat
ctaacttatctgatttgtgatattttactactatatacaacgttgaaaaatttctatata
gatccgtgttattttttttcgctattttttcgatatgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCCAAAATGCATGTTTCCTT 401 115 30 Antisense
TTCCTTCCTGTTTTTCGTACATTAT 673 699 49 Antisense
GCTCAAAAAATCATCACTTCACCCA 478 301 76 Antisense
TCACTTCACCCAAAAAATTTCGCGT 665 625 89 Antisense
TTCCCACACATTCAACATTGTCTCG 525 697 134 Antisense
ACATTGTCTCGTCTTTGTTTCAGTT 115 105 148 Antisense
TCGTCTTTGTTTCAGTTCACTTTTC 499 603 156 Antisense
TTCACTTTTCCCTTCGATAAATACA 348 685 171 Antisense
AATTTCTCAATTTATCTAACTTATC 622 173 195 Antisense
GATCCGTGTTATTTTTTTTCGCTAT 504 415 270 Antisense
TTTCGCTATTTTTTCGATATGATGT 63 671 286 Antisense
Sequence Source Affymetrix Proprietary Database