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[174711_at] Zinc finger, C2H2 type (2 domains)

Description CEK088B3R_rc /REP_DB=TREMBL Accession /GB=D64754 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 24      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 51      6grp_total > 03      4grp_total > 55      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 710.1
(3)
P 		203
(-3)
P 		312
(-1.7)
P 		239.7
(-2.6)
P 		507
B 542.7
(3)
P 		282.1
(-1.8)
P 		218.1
(-3)
P 		356.3
(-0.4)
P 		325
C 581.3
(3)
P 		278.7
(-1.3)
P 		374.5
(0.1)
P 		156.7
(-3)
P 		425
avr 611.4
(3) 		254.6
(-2.9) 		301.5
(-2.2) 		250.9
(-3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 386.6
(-1.1)
P 		560.9
(3)
P 		302.9
(-3)
P 		474.4
(1)
P 		527.2
(2.2)
P 		321.3
(-2.6)
P 		258
B 666.2
(3)
P 		662.3
(2.9)
P 		320.8
(-3)
P 		549.8
(1)
P 		456.6
(-0.6)
P 		458.4
(-0.6)
P 		345
C 745.9
(3)
P 		644.8
(1.1)
P 		531.9
(-1.1)
P 		591.9
(0.1)
P 		471.3
(-2.2)
P 		430
(-3)
P 		316
avr 599.6
(2.4) 		622.7
(3) 		385.2
(-3) 		538.7
(0.9) 		485
(-0.5) 		403.2
(-2.5) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 258.5
(3)
P 		44.1
(-2.8)
P 		81.6
(-1.8)
P 		35.1
(-3)
P 		223
B 173.1
(3)
P 		69.7
(-2.1)
P 		50.5
(-3)
P 		75.9
(-1.8)
P 		123
C 192.4
(3)
P 		80.1
(-1.1)
P 		130.5
(0.8)
P 		26.4
(-3)
P 		166
avr 208
(3) 		64.6
(-2.3) 		87.5
(-1.5) 		45.8
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 71.3
(-2.8)
P 		199.5
(3)
P 		66
(-3)
P 		120.3
(-0.6)
P 		159.1
(1.2)
P 		78.2
(-2.5)
P 		134
B 231.8
(3)
P 		220.5
(2.6)
P 		77.9
(-3)
P 		145.6
(-0.4)
P 		185.5
(1.2)
P 		170.9
(0.6)
P 		154
C 276.5
(3)
P 		196.7
(-0)
P 		135.4
(-2.4)
P 		119
(-3)
P 		152.5
(-1.7)
P 		143.9
(-2.1)
P 		158
avr 193.2
(2.3) 		205.6
(3) 		93.1
(-3) 		128.3
(-1.1) 		165.7
(0.9) 		131
(-1) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20767
Sequence Type Exemplar sequence
Representative Public ID CEK088B3R NCBI
Target Description CEK088B3R_rc /REP_DB=TREMBL Accession /GB=D64754 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063255 NCBI Caenorhabditis elegans T09A5.12 (T09A5.12) mRNA, complete cds. 11/11 None
T09A5.12.1 ENSEMBL cdna:known chromosome:CEL140:II:7866175:7870082:-1 gene:T09A5.12 11/11 None
T09A5.12.2 ENSEMBL cdna:known chromosome:CEL140:II:7866175:7870084:-1 gene:T09A5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029452 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7866204-7866636(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl T09A5.12
Entrez Gene 174269 Entrez gene
SwissProt P45972 EMBL-EBI
WormBase CE03646 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85341 Hypothetical protein T09A5.12 [Caenorhabditis elegans] ref|NP_495656.1| T09A5.12 [Caenorhabditis elegans] sp|P45972|YNZB_CAEEL Hypothetical protein T09A5.12 in chromosome III 0.0
blast CAE59829 Hypothetical protein CBG03301 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495656.1 1 683-705
T09A5.12.1 1 683-705
T09A5.12.2 1 683-705
Sequence
Target Sequence 
>C. ELEGANS:174711_AT
gtgttatttctagttgtagtgtgttttttctttctattttactcttttaggttgtgttac
ccttttaattttaagaaagctttgactatgaattaaatcttttattgtaatcttcaattt
tcaatcttttataataatcttcaattttcagtagatcaatacattttggttatcttcttt
tttgagaaataccgtacccacctctctgcactttgtcatataagctaggaagttggttgt
attctacgtttctttttacctttacattgtttctttatattcatcttcttaatgctcatt
tcaatgtaaatatactcggttatcaaaagattaccagagtcatccattcaccctctcttc
tgattaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTATTTCTAGTTGTAGTGTGTT 679 485 13 Antisense
TCTATTTTACTCTTTTAGGTTGTGT 63 615 45 Antisense
GATCAATACATTTTGGTTATCTTCT 198 423 166 Antisense
CATTTTGGTTATCTTCTTTTTTGAG 331 215 174 Antisense
ACCTCTCTGCACTTTGTCATATAAG 638 87 212 Antisense
GAAGTTGGTTGTATTCTACGTTTCT 513 335 241 Antisense
TTACCTTTACATTGTTTCTTTATAT 227 683 268 Antisense
ATTGTTTCTTTATATTCATCTTCTT 203 5 278 Antisense
ATTCATCTTCTTAATGCTCATTTCA 699 11 291 Antisense
AGATTACCAGAGTCATCCATTCACC 336 65 340 Antisense
ATTCACCCTCTCTTCTGATTAAAGT 441 11 358 Antisense
Sequence Source Affymetrix Proprietary Database