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[174709_at]

Description CEK010B3R_rc /REP_DB=TREMBL Accession /GB=D27458 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 94      6grp_total > 87      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 183.8
(-3)
P 		192.4
(-2.4)
P 		267.9
(3)
P 		229.1
(0.2)
P 		84
B 185.5
(-3)
P 		271.9
(0.1)
P 		354.9
(3)
P 		343.8
(2.6)
P 		169
C 231.1
(-3)
P 		393.4
(3)
P 		366.8
(2)
P 		325.4
(0.5)
P 		162
avr 200.1
(-3) 		285.9
(1) 		329.9
(3) 		299.4
(1.6) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 231.6
(-2.8)
P 		216.3
(-3)
P 		330.2
(-1.8)
P 		293.9
(-2.2)
P 		672.4
(1.8)
P 		791
(3)
P 		575
B 388.9
(-2)
P 		261.1
(-3)
P 		267.6
(-2.9)
P 		412.7
(-1.8)
P 		577.2
(-0.4)
P 		1002.5
(3)
P 		741
C 164.4
(-3)
P 		340.9
(-1.7)
P 		256.8
(-2.3)
P 		560.5
(-0.1)
P 		478
(-0.7)
P 		979.5
(3)
P 		815
avr 261.6
(-3) 		272.8
(-2.9) 		284.9
(-2.8) 		422.4
(-1.5) 		575.9
(-0.2) 		924.3
(3) 		663
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 66.9
(2.5)
P 		41.8
(-1.6)
P 		70
(3)
P 		33.5
(-3)
P 		37
B 59.2
(-3)
P 		67.2
(-0.9)
P 		82.2
(3)
P 		73.3
(0.7)
P 		23
C 76.5
(-1.2)
P 		113.1
(1.8)
P 		127.8
(3)
P 		54.9
(-3)
P 		73
avr 67.5
(-0.9) 		74
(0.1) 		93.3
(3) 		53.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 42.7
(-3)
P 		76.9
(-1.7)
P 		71.9
(-1.9)
P 		74.5
(-1.8)
P 		202.9
(3)
P 		192.6
(2.6)
P 		160
B 135.3
(-1.6)
P 		86.9
(-2.6)
P 		65
(-3)
P 		109.3
(-2.1)
P 		234.5
(0.3)
P 		373.8
(3)
P 		309
C 60.9
(-3)
P 		104
(-2)
P 		65.4
(-2.9)
P 		112.7
(-1.8)
P 		154.7
(-0.9)
P 		327.9
(3)
P 		267
avr 79.6
(-2.7) 		89.3
(-2.4) 		67.4
(-3) 		98.8
(-2.2) 		197.4
(0.4) 		298.1
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21022
Sequence Type Exemplar sequence
Representative Public ID CEK010B3R NCBI
Target Description CEK010B3R_rc /REP_DB=TREMBL Accession /GB=D27458 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK010B3R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK010B3R CEK010B3R_rc /REP_DB=TREMBL Accession /GB=D27458 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10b3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:174709_AT
gggtaattccagacctcaaatctttatttaaaaatatcttttgcgcaagcaaagatgact
gacgcactctcacgctggcgcacttctcgattctggcgcgaaatcagtttttgtcatctt
ttttcgaggattcttcctcattcttggattttgctcggacacagcgtgttgactcgttgt
tagagctccagtttcagtggttttggcctgttgttggcttatttttatagtcttttattg
tttttcttggatttctggcgctctgcctgtttctttgaaggtttctggtttagtgttgat
tcttctccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTAATTCCAGACCTCAAATCTTT 32 495 14 Antisense
CAAAGATGACTGACGCACTCTCACG 269 193 63 Antisense
CACTTCTCGATTCTGGCGCGAAATC 428 197 94 Antisense
AGGATTCTTCCTCATTCTTGGATTT 2 57 140 Antisense
ATTCTTGGATTTTGCTCGGACACAG 670 11 153 Antisense
GGACACAGCGTGTTGACTCGTTGTT 470 525 170 Antisense
GACTCGTTGTTAGAGCTCCAGTTTC 50 375 184 Antisense
GCTCCAGTTTCAGTGGTTTTGGCCT 260 287 198 Antisense
GGTTTTGGCCTGTTGTTGGCTTATT 521 505 212 Antisense
CGCTCTGCCTGTTTCTTTGAAGGTT 624 255 272 Antisense
GGTTTAGTGTTGATTCTTCTCCAGT 129 507 300 Antisense
Sequence Source Affymetrix Proprietary Database