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[174708_at]

Description CEK016B4R_rc /REP_DB=TREMBL Accession /GB=D32440 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 68      6grp_total > 85      4grp_total > 04      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2543
1 2 3 4 range
A 2593.3
(0.1)
P 		1416.4
(-3)
P 		1617.2
(-2.5)
P 		3691.6
(3)
P 		2275
B 2114.2
(-1)
P 		1851
(-1.6)
P 		1298.9
(-3)
P 		3739.5
(3)
P 		2441
C 1965.5
(-1.8)
P 		1920
(-1.9)
P 		1486.1
(-3)
P 		3841.9
(3)
P 		2356
avr 2224.3
(-1) 		1729.1
(-2.3) 		1467.4
(-3) 		3757.7
(3) 		2290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1177
1 2 3 4 5 6 range
A 1782.9
(-0.9)
P 		1833.2
(-0.6)
P 		1365.1
(-3)
P 		1911.5
(-0.2)
P 		2127.4
(0.9)
P 		2539.8
(3)
P 		1175
B 2208
(-1.6)
P 		2168.6
(-2.1)
P 		2213.1
(-1.5)
P 		2541.6
(3)
P 		2107
(-3)
P 		2407.5
(1.1)
P 		435
C 1917.6
(-3)
P 		1987.4
(-1.7)
P 		1943.6
(-2.5)
P 		2230.9
(3)
P 		1922.2
(-2.9)
P 		1963.9
(-2.1)
P 		313
avr 1969.5
(-1.3) 		1996.4
(-1) 		1840.6
(-3) 		2228
(2) 		2052.2
(-0.3) 		2303.7
(3) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 944.2
(3)
P 		307.5
(-3)
P 		422.8
(-1.9)
P 		540.4
(-0.8)
P 		637
B 674.2
(1.5)
P 		457.2
(-1.1)
P 		301
(-3)
P 		796.9
(3)
P 		496
C 650.6
(3)
P 		552
(-1.5)
P 		517.9
(-3)
P 		647.8
(2.9)
P 		133
avr 756.3
(3) 		438.9
(-2.6) 		413.9
(-3) 		661.7
(1.3) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 328.7
(-2.5)
P 		652
(3)
P 		297.3
(-3)
P 		484.8
(0.2)
P 		642
(2.8)
P 		618.4
(2.4)
P 		355
B 768.3
(0.8)
P 		721.8
(0.1)
P 		537.4
(-3)
P 		673.2
(-0.7)
P 		856.1
(2.3)
P 		897.8
(3)
P 		360
C 710.8
(3)
P 		606.4
(0.6)
P 		494.7
(-1.9)
P 		448.6
(-3)
P 		622
(1)
P 		657.4
(1.8)
P 		262
avr 602.6
(0.4) 		660.1
(1.6) 		443.1
(-3) 		535.5
(-1) 		706.7
(2.6) 		724.5
(3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20489
Sequence Type Exemplar sequence
Representative Public ID CEK016B4R NCBI
Target Description CEK016B4R_rc /REP_DB=TREMBL Accession /GB=D32440 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063302 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-4) (ulp-4) mRNA, complete cds. 11/11 None
C41C4.6 ENSEMBL cdna:known chromosome:CEL140:II:8129881:8134644:1 gene:C41C4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8134225-8134631(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-4
Ensembl C41C4.6
Entrez Gene 174307 Entrez gene
SwissProt Q09275 EMBL-EBI
WormBase CE01521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88104 Hypothetical protein C41C4.6 [Caenorhabditis elegans] ref|NP_495703.1| Ubiquitin-Like Protease family member (ulp-4) [Caenorhabditis elegans] sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 (Ubiquitin-like protease 4) 1.0E-179
blast CAE57737 Hypothetical protein CBG00748 [Caenorhabditis briggsae] 1.0E-157
blast EAA11878 ENSANGP00000004517 [Anopheles gambiae str. PEST] ref|XP_315906.2| ENSANGP00000004517 [Anopheles gambiae str. PEST] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:174708_AT
gtcggatccatgacacaaattccaaaatatatttggtaatcgaatattgaaaagaaatca
agaacgacatttctcaaaaattcattttcaatcttcaattgtcatttaaaattttggtgt
ccgctggttttcacatcttgttatatttatgatttcattttctttttttgttttttttac
tagcgcctcggttgattggatgatatgggtcgtatcgtttttctacatttttgatttgat
aatattatttttgtcaaacttccatgttattcgttcctaccgtttttttctcccgttttc
ccaatttttatgtggttctctttctttagattcatagggtctgtcctcatattgttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGATCCATGACACAAATTCCAA 141 473 18 Antisense
GTCATTTAAAATTTTGGTGTCCGCT 480 467 118 Antisense
CCGCTGGTTTTCACATCTTGTTATA 703 261 138 Antisense
TTTTTTTACTAGCGCCTCGGTTGAT 242 665 189 Antisense
TAGCGCCTCGGTTGATTGGATGATA 372 651 198 Antisense
ATGGGTCGTATCGTTTTTCTACATT 457 49 222 Antisense
CAAACTTCCATGTTATTCGTTCCTA 91 191 272 Antisense
CAATTTTTATGTGGTTCTCTTTCTT 303 181 319 Antisense
GTGGTTCTCTTTCTTTAGATTCATA 142 489 329 Antisense
TAGATTCATAGGGTCTGTCCTCATA 66 653 344 Antisense
TAGGGTCTGTCCTCATATTGTTCCA 584 653 352 Antisense
Sequence Source Affymetrix Proprietary Database