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[174705_at]

Description CEK019A2R_rc /REP_DB=TREMBL Accession /GB=D32578 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 10      6grp_total > 28      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1213
1 2 3 4 range
A 1941.9
(3)
P 		1435.1
(-1.1)
P 		1202
(-3)
P 		1300.4
(-2.2)
P 		740
B 1448.4
(3)
P 		915.7
(-1.4)
P 		729
(-3)
P 		1445.8
(3)
P 		719
C 1488.8
(3)
P 		1018.9
(-3)
P 		1207.5
(-0.6)
P 		1235.3
(-0.2)
P 		470
avr 1626.4
(3) 		1123.2
(-2.2) 		1046.2
(-3) 		1327.2
(-0.1) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1399
1 2 3 4 5 6 range
A 2257.3
(3)
P 		1520.9
(-0.3)
P 		909.6
(-3)
P 		1053.4
(-2.4)
P 		1144.6
(-2)
P 		1329.5
(-1.1)
P 		1348
B 2026.6
(3)
P 		1106.6
(-1.8)
P 		886.1
(-2.9)
P 		1033.2
(-2.1)
P 		868.7
(-3)
P 		1532.1
(0.4)
P 		1158
C 2064.4
(3)
P 		1474.4
(0.1)
P 		1132.6
(-1.6)
P 		893.8
(-2.8)
P 		1535
(0.4)
P 		858.7
(-3)
P 		1206
avr 2116.1
(3) 		1367.3
(-0.9) 		976.1
(-3) 		993.5
(-2.9) 		1182.8
(-1.9) 		1240.1
(-1.6) 		1140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 707.1
(3)
P 		311.5
(-1.6)
P 		314.2
(-1.6)
P 		190.4
(-3)
P 		517
B 461.9
(3)
P 		226.2
(-1.8)
P 		168.9
(-3)
P 		308.1
(-0.1)
P 		293
C 492.8
(3)
P 		293
(-1.2)
P 		420.9
(1.5)
P 		208.3
(-3)
P 		285
avr 553.9
(3) 		276.9
(-2.2) 		301.3
(-1.8) 		235.6
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 586
1 2 3 4 5 6 range
A 416.1
(0.8)
P 		540.9
(3)
P 		198.1
(-3)
P 		267.2
(-1.8)
P 		345.4
(-0.4)
P 		323.7
(-0.8)
P 		343
B 705.2
(3)
P 		368.4
(-1.1)
P 		215.2
(-3)
P 		273.7
(-2.3)
P 		352.9
(-1.3)
P 		571.3
(1.4)
P 		490
C 765.2
(3)
P 		449.9
(-0.2)
P 		288.3
(-1.9)
P 		179.7
(-3)
P 		496.7
(0.2)
P 		287.5
(-1.9)
P 		586
avr 628.8
(3) 		453.1
(0.3) 		233.9
(-3) 		240.2
(-2.9) 		398.3
(-0.5) 		394.2
(-0.6) 		395
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21019
Sequence Type Exemplar sequence
Representative Public ID CEK019A2R NCBI
Target Description CEK019A2R_rc /REP_DB=TREMBL Accession /GB=D32578 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066115 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-1) (ntl-1) mRNA, complete cds. 11/11 None
F57B9.2 ENSEMBL cdna:known chromosome:CEL140:III:6946696:6958809:1 gene:F57B9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6958408-6958756(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ntl-1
Ensembl F57B9.2
Entrez Gene 175971 Entrez gene
SwissProt Q20937 EMBL-EBI
WormBase CE01337 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264168_AT transcriptional regulator-related at
ATGENOME1:14983_AT transcriptional regulator-related at
DROSOPHILA_2:1638560_A_AT dm
DROSOPHILA_2:1637544_S_AT dm
DROSOPHILA_2:1624421_AT dm
DROSGENOME1:141686_AT dm
CHICKEN:GGA.10535.1.S1_S_AT CCR4-NOT transcription complex, subunit 1 gga
CHICKEN:GGA.10535.2.S1_A_AT CCR4-NOT transcription complex, subunit 1 gga
CHICKEN:GGA.10535.2.S1_S_AT CCR4-NOT transcription complex, subunit 1 gga
CHICKEN:GGA.3127.1.S1_AT CCR4-NOT transcription complex, subunit 1 gga
CHICKEN:GGAAFFX.25443.1.S1_S_AT CCR4-NOT transcription complex, subunit 1 gga
HG-U133_PLUS_2:200860_S_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133A:200860_S_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133A_2:200860_S_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133_PLUS_2:200861_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133A:200861_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133A_2:200861_AT CCR4-NOT transcription complex, subunit 1 hs
HU35KSUBA:RC_AA179933_AT CCR4-NOT transcription complex, subunit 1 hs
HU35KSUBA:AA379273_S_AT CCR4-NOT transcription complex, subunit 1 hs
HU35KSUBD:RC_AA350744_R_AT CCR4-NOT transcription complex, subunit 1 hs
U133_X3P:G7706213_3P_AT CCR4-NOT transcription complex, subunit 1 hs
U133_X3P:G12653966_3P_A_AT CCR4-NOT transcription complex, subunit 1 hs
U133_X3P:HS2.279949.2.S1_3P_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U133_PLUS_2:1554052_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U95AV2:41727_AT CCR4-NOT transcription complex, subunit 1 hs
HG-U95D:71233_AT CCR4-NOT transcription complex, subunit 1 hs
RG-U34C:RC_AI179865_AT similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted) rn
RAE230A:1398951_AT similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted) rn
RAT230_2:1398951_AT similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA21168 Not-like (yeast ccr4/not complex component) protein 1 [Caenorhabditis elegans] ref|NP_498516.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-1) [Caenorhabditis elegans] 0.0
blast CAE70051 Hypothetical protein CBG16483 [Caenorhabditis briggsae] 0.0
blast XP_683755 PREDICTED: CCR4-NOT transcription complex, subunit 1 isoform 1 [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007196 EMBL-EBI CCR4-Not complex component, Not1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174705_AT
tccccaaaattacccttttcatgcaatttttagattagaataacgaaaaaacggcttgaa
gttaatgatggttgaattttcagaaagggtggtggtctttttctgtaaattcgacgtttt
ctgcccgctttttcgttattttaaagacttgtacatccgatagatcgattgcgccatttt
cgacgtattcctccgtgtatagaaatctttttaaattgtgtgaaaacatttaaaatcgcg
ctagatgtctttgtctatttatcgttcccataaccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCCAAAATTACCCTTTTCATGCA 255 593 33 Antisense
TTACCCTTTTCATGCAATTTTTAGA 13 683 42 Antisense
TGGTGGTCTTTTTCTGTAAATTCGA 640 551 122 Antisense
TCTGTAAATTCGACGTTTTCTGCCC 119 607 134 Antisense
TAAAGACTTGTACATCCGATAGATC 234 641 174 Antisense
CCGATAGATCGATTGCGCCATTTTC 76 265 189 Antisense
TCGATTGCGCCATTTTCGACGTATT 24 603 197 Antisense
TCGACGTATTCCTCCGTGTATAGAA 148 599 212 Antisense
AAAATCGCGCTAGATGTCTTTGTCT 247 133 264 Antisense
ATGTCTTTGTCTATTTATCGTTCCC 588 47 277 Antisense
TCTATTTATCGTTCCCATAACCTTT 685 613 286 Antisense
Sequence Source Affymetrix Proprietary Database