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[174704_at]

Description CEK045A2R_rc /REP_DB=TREMBL Accession /GB=D34370 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk45a2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_high_8_8 > 18      6grp_highest_nonorm > 91      6grp_total > 49      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 227.4
(3)
P 		148.8
(-0.5)
P 		93.3
(-3)
P 		151
(-0.4)
P 		134
B 129.8
(0.9)
P 		53.7
(-3)
A 		77.3
(-1.8)
P 		172.1
(3)
P 		118
C 171.8
(2.6)
P 		141.9
(-0.5)
P 		118
(-3)
P 		176
(3)
P 		58
avr 176.3
(3) 		114.8
(-1.6) 		96.2
(-3) 		166.4
(2.3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 300.5
(3)
P 		206.8
(-1.3)
P 		221.7
(-0.6)
P 		170
(-3)
P 		249.1
(0.6)
P 		275.7
(1.9)
P 		131
B 189.4
(0.8)
P 		102.8
(-1.8)
P 		64.7
(-3)
P 		182.6
(0.6)
P 		174.8
(0.4)
P 		259.6
(3)
P 		195
C 282.2
(3)
P 		234.7
(0.2)
P 		191.7
(-2.4)
P 		184
(-2.9)
P 		210.1
(-1.3)
P 		182.1
(-3)
P 		100
avr 257.4
(3) 		181.4
(-1.7) 		159.4
(-3) 		178.9
(-1.8) 		211.3
(0.2) 		239.1
(1.9) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 82.8
(3)
P 		32.3
(-2)
P 		24.4
(-2.8)
P 		22.1
(-3)
P 		61
B 41.4
(3)
P 		13.3
(-3)
A 		17.9
(-2)
P 		36.7
(2)
P 		28
C 56.9
(3)
P 		40.8
(-0.6)
P 		41.1
(-0.5)
P 		29.7
(-3)
P 		27
avr 60.4
(3) 		28.8
(-2.8) 		27.8
(-3) 		29.5
(-2.7) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 55.4
(-0.7)
P 		73.5
(2.7)
P 		48.3
(-2)
P 		43.1
(-3)
P 		75.2
(3)
P 		67.1
(1.5)
P 		32
B 65.9
(0.7)
P 		34.2
(-1.6)
P 		15.7
(-3)
P 		48.4
(-0.6)
P 		71
(1.1)
P 		96.8
(3)
P 		81
C 104.6
(3)
P 		71.6
(0.1)
P 		48.8
(-2)
P 		37
(-3)
P 		68
(-0.2)
P 		61
(-0.9)
P 		68
avr 75.3
(3) 		59.8
(0.5) 		37.6
(-3) 		42.8
(-2.2) 		71.4
(2.4) 		75
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20339
Sequence Type Exemplar sequence
Representative Public ID CEK045A2R NCBI
Target Description CEK045A2R_rc /REP_DB=TREMBL Accession /GB=D34370 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk45a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059273 NCBI Caenorhabditis elegans F56H1.5 (F56H1.5) mRNA, complete cds. 11/11 None
F56H1.5 ENSEMBL cdna:known chromosome:CEL140:I:5762481:5770503:-1 gene:F56H1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5762490-5762694(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H1.5
Entrez Gene 172241 Entrez gene
SwissProt O76373 EMBL-EBI
WormBase CE17916 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19197 Hypothetical protein F56H1.5 [Caenorhabditis elegans] ref|NP_491674.1| F56H1.5 [Caenorhabditis elegans] 0.0
blast CAE67388 Hypothetical protein CBG12873 [Caenorhabditis briggsae] 0.0
blast NP_001019616 ATP/GTP binding protein 1 [Danio rerio] gb|AAY42353.1| ATP/GTP binding protein 1 [Danio rerio] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.2E-82
Sequence
Target Sequence 
>C. ELEGANS:174704_AT
tcagcaaacaggatcttattgaaaaatatcatgtttgctgatttctttcagtttcttgtc
accttttttcaaaacattttttttcgtttttgtgatcacgtttccatatttttccggatt
tctccaacgatctcttgttttttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCAAACAGGATCTTATTGAAAA 242 609 13 Antisense
TTTGCTGATTTCTTTCAGTTTCTTG 194 669 46 Antisense
TCAGTTTCTTGTCACCTTTTTTCAA 54 625 60 Antisense
TTTCGTTTTTGTGATCACGTTTCCA 371 671 94 Antisense
TGTGATCACGTTTCCATATTTTTCC 639 555 103 Antisense
TGATCACGTTTCCATATTTTTCCGG 236 559 105 Antisense
TCACGTTTCCATATTTTTCCGGATT 225 625 108 Antisense
TTCCATATTTTTCCGGATTTCTCCA 694 699 114 Antisense
TATTTTTCCGGATTTCTCCAACGAT 158 661 119 Antisense
ATTTCTCCAACGATCTCTTGTTTTT 171 17 130 Antisense
TCCAACGATCTCTTGTTTTTTCACC 83 587 135 Antisense
Sequence Source Affymetrix Proprietary Database