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[174703_at]

Description CEK056F3R_rc /REP_DB=TREMBL Accession /GB=D65441 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk56f3 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 19.7
(-3)
A 		64.5
(0.5)
A 		65.5
(0.6)
A 		97
(3)
A 		77
B 33.8
(-1.8)
A 		97.2
(3)
A 		17.5
(-3)
A 		84.4
(2)
A 		80
C 15
(-3)
A 		68.5
(0.7)
A 		59.7
(0.1)
A 		102.5
(3)
A 		88
avr 22.8
(-3) 		76.7
(1.5) 		47.6
(-0.9) 		94.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 106.9
(-2)
A 		19.1
(-3)
A 		44.4
(-2.7)
A 		146
(-1.5)
P 		359.2
(0.9)
P 		537.6
(3)
P 		519
B 37
(-2.9)
A 		29.6
(-3)
A 		62.4
(-2.4)
A 		138.8
(-1.1)
P 		219.1
(0.3)
P 		369.2
(3)
P 		340
C 15.5
(-3)
A 		64.4
(-2.2)
A 		64.2
(-2.2)
A 		111.4
(-1.4)
A 		298.1
(1.8)
P 		366.9
(3)
P 		351
avr 53.1
(-2.8) 		37.7
(-3) 		57
(-2.7) 		132.1
(-1.5) 		292.1
(0.9) 		424.6
(3) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 7.2
(-3)
A 		14
(1.1)
A 		17.1
(3)
A 		14.2
(1.2)
A 		10
B 10.8
(-1)
A 		24
(3)
A 		4
(-3)
A 		18
(1.2)
A 		20
C 5
(-3)
A 		19.7
(2.6)
A 		20.8
(3)
A 		17.3
(1.7)
A 		16
avr 7.7
(-3) 		19.2
(3) 		14
(0.3) 		16.5
(1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 19.7
(-2.4)
A 		6.8
(-3)
A 		9.7
(-2.9)
A 		37
(-1.5)
P 		108.4
(1.9)
P 		130.9
(3)
P 		124
B 12.9
(-2.9)
A 		9.9
(-3)
A 		15.2
(-2.8)
A 		36.8
(-1.7)
P 		89
(0.7)
P 		137.7
(3)
P 		128
C 5.7
(-3)
A 		19.7
(-2.3)
A 		16.3
(-2.5)
A 		22.4
(-2.1)
A 		96.5
(1.7)
P 		122.8
(3)
P 		117
avr 12.8
(-3) 		12.1
(-3) 		13.7
(-2.9) 		32.1
(-2) 		98
(1.4) 		130.5
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21760
Sequence Type Exemplar sequence
Representative Public ID CEK056F3R NCBI
Target Description CEK056F3R_rc /REP_DB=TREMBL Accession /GB=D65441 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk56f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072011 NCBI Caenorhabditis elegans B0238.9 (B0238.9) mRNA, complete cds. 11/11 None
B0238.9 ENSEMBL cdna:known chromosome:CEL140:V:5275379:5277913:-1 gene:B0238.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5275401-5275863(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0238.9
Entrez Gene 178917 Entrez gene
SwissProt O16485 EMBL-EBI
WormBase CE32558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65988 Hypothetical protein B0238.9 [Caenorhabditis elegans] ref|NP_504412.2| B0238.9 [Caenorhabditis elegans] 0.0
blast CAE62641 Hypothetical protein CBG06775 [Caenorhabditis briggsae] 1.0E-133
blast CAB58233 headcase protein [Drosophila melanogaster] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:174703_AT
tatgtccattccagtagattccgttctaataacacgtctttcaatcaatttttaatgtat
agtcatatctttccccccagctcccacacgatcaattcttacaaattttttttttgcccc
caattcgatgttttcatagattttccacgattctcgtttcccacacaattttttctcgcc
ccctgacaaatagtataatcaagccgaacatttcaaagatttctttttttaccggaaaaa
aatgttgtcctttcaaatgtaatgaatttattgtcggcatgacttttttccattccatct
cttacgttttctttcatgttcccgtcaagttttatttattcatctaatttctaaattgct
cgcttttctcctgaaacttttcctttaacaagccaccttttcatgtacacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTCCATTCCAGTAGATTCCGTT 367 655 26 Antisense
ATAACACGTCTTTCAATCAATTTTT 355 25 54 Antisense
TAATGTATAGTCATATCTTTCCCCC 404 635 78 Antisense
CTCCCACACGATCAATTCTTACAAA 29 235 106 Antisense
TCGTTTCCCACACAATTTTTTCTCG 173 605 179 Antisense
TCTCGCCCCCTGACAAATAGTATAA 3 611 199 Antisense
TTATTGTCGGCATGACTTTTTTCCA 348 679 293 Antisense
TCCATCTCTTACGTTTTCTTTCATG 12 591 319 Antisense
TTTCATGTTCCCGTCAAGTTTTATT 318 673 337 Antisense
ATTTCTAAATTGCTCGCTTTTCTCC 383 15 372 Antisense
AGCCACCTTTTCATGTACACATTCA 537 83 416 Antisense
Sequence Source Affymetrix Proprietary Database