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[174702_at]

Description CEK034E9R_rc /REP_DB=TREMBL Accession /GB=D33683 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 30      6grp_total > 18      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 732.1
(1.3)
P 		793.7
(3)
P 		665.2
(-0.5)
P 		572.3
(-3)
P 		221
B 864
(3)
P 		669.6
(-0.4)
P 		638.2
(-1)
P 		521.5
(-3)
P 		343
C 633.7
(-2.2)
P 		877.8
(3)
P 		745.9
(0.2)
P 		595.2
(-3)
P 		283
avr 743.3
(2) 		780.4
(3) 		683.1
(0.3) 		563
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 946
1 2 3 4 5 6 range
A 1464.7
(3)
P 		670.4
(-2.6)
P 		658.9
(-2.7)
P 		620.6
(-3)
P 		769.1
(-1.9)
P 		782.9
(-1.8)
P 		844
B 1062.8
(3)
P 		905.1
(1.2)
P 		546.5
(-3)
P 		880.4
(0.9)
P 		561
(-2.8)
P 		658.6
(-1.7)
P 		516
C 982.2
(3)
P 		785.5
(0.5)
P 		683
(-0.9)
P 		518.4
(-3)
P 		595.3
(-2)
P 		525.9
(-2.9)
P 		464
avr 1169.9
(3) 		787
(-1.3) 		629.5
(-3) 		673.1
(-2.5) 		641.8
(-2.9) 		655.8
(-2.7) 		540
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 266.6
(3)
P 		172.3
(-0.1)
P 		173.9
(-0)
P 		83.8
(-3)
P 		183
B 275.5
(3)
P 		165.4
(-1)
P 		147.9
(-1.7)
P 		111.1
(-3)
P 		164
C 209.8
(1.1)
P 		252.4
(2.7)
P 		260
(3)
P 		100.4
(-3)
P 		160
avr 250.6
(3) 		196.7
(0.9) 		193.9
(0.8) 		98.4
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 270
(3)
P 		238.4
(1.5)
P 		143.5
(-3)
P 		157.4
(-2.3)
P 		232.1
(1.2)
P 		190.6
(-0.8)
P 		127
B 369.8
(3)
P 		301.3
(1.3)
P 		132.7
(-3)
P 		233.2
(-0.5)
P 		227.9
(-0.6)
P 		245.6
(-0.1)
P 		237
C 364
(3)
P 		239.7
(0.1)
P 		173.8
(-1.4)
P 		104.2
(-3)
P 		192.6
(-1)
P 		176.1
(-1.3)
P 		260
avr 334.6
(3) 		259.8
(0.6) 		150
(-3) 		164.9
(-2.5) 		217.5
(-0.8) 		204.1
(-1.2) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21016
Sequence Type Exemplar sequence
Representative Public ID CEK034E9R NCBI
Target Description CEK034E9R_rc /REP_DB=TREMBL Accession /GB=D33683 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026059(11), NM_001026060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026059 NCBI Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds. 11/11 None
NM_001026060 NCBI Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds. 11/11 None
D2045.1a ENSEMBL cdna:known chromosome:CEL140:III:10461509:10467931:1 gene:D2045.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10467559-10467906(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2045.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS78587 ATX-2 [Caenorhabditis elegans] emb|CAA84697.3| Hypothetical protein D2045.1a [Caenorhabditis elegans] ref|NP_001021230.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 0.0
blast CAE71459 Hypothetical protein CBG18377 [Caenorhabditis briggsae] 1.0E-112
blast CAI46560 Hypothetical protein D2045.1b [Caenorhabditis elegans] ref|NP_001021231.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 4.0E-96
blast AAS78587 ATX-2 [Caenorhabditis elegans] emb|CAA84697.3| Hypothetical protein D2045.1a [Caenorhabditis elegans] ref|NP_001021230.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 4.0E-96
blast CAI46560 Hypothetical protein D2045.1b [Caenorhabditis elegans] ref|NP_001021231.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 6.0E-96
blast CAE71459 Hypothetical protein CBG18377 [Caenorhabditis briggsae] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR009604 EMBL-EBI Ataxin-2, N-terminal 8.0E-10
Sequence
Target Sequence 
>C. ELEGANS:174702_AT
cttctccccacacaaattacttgtagtgtcggaaaaagtacacttttccgtacacgaagg
atcatgtcaaaatgctcctttcactttttattcgttatttctctcgctctgccttcctga
ttatccgtttccgagaccgtcttattctttttttttcttgtaaaaccaaaccaataatcc
ttccttttttctttttttttgagcaataccatccctccccccacaacaaaatctataatt
tatttccttaacattattatcttcaaccatctcgcgcacactactcatattctagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTCCCCACACAAATTACTTGTA 284 217 34 Antisense
TACACTTTTCCGTACACGAAGGATC 505 641 72 Antisense
GGATCATGTCAAAATGCTCCTTTCA 705 511 92 Antisense
GCTCCTTTCACTTTTTATTCGTTAT 420 295 107 Antisense
TTTTATTCGTTATTTCTCTCGCTCT 49 677 119 Antisense
TTCCTGATTATCCGTTTCCGAGACC 680 697 147 Antisense
TTTTTTGAGCAATACCATCCCTCCC 107 675 228 Antisense
TCCCCCCACAACAAAATCTATAATT 526 595 249 Antisense
ATCTATAATTTATTTCCTTAACATT 512 31 264 Antisense
ACATTATTATCTTCAACCATCTCGC 585 105 284 Antisense
TCGCGCACACTACTCATATTCTAGT 289 599 305 Antisense
Sequence Source Affymetrix Proprietary Database