[Home] | [Total List]

[174701_at]

Description CEK016F9R_rc /REP_DB=TREMBL Accession /GB=D27656 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 88      6grp_total > 89      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 1598.1
(3)
P 		904.1
(-3)
P 		1090.2
(-1.4)
P 		1406
(1.3)
P 		694
B 1659.2
(3)
P 		1005.7
(-2.8)
P 		977.8
(-3)
P 		1542
(2)
P 		681
C 1516.8
(3)
P 		960.7
(-3)
P 		1113.1
(-1.4)
P 		970.8
(-2.9)
P 		556
avr 1591.4
(3) 		956.8
(-3) 		1060.4
(-2) 		1306.3
(0.3) 		635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1195
1 2 3 4 5 6 range
A 1273.4
(-0.3)
P 		1033.6
(-1.5)
P 		735.5
(-3)
P 		840
(-2.5)
P 		1696.1
(1.8)
P 		1930.3
(3)
P 		1195
B 997.1
(-1.8)
P 		1111.6
(-1)
P 		808.9
(-3)
P 		1199.3
(-0.5)
P 		1271.9
(-0)
P 		1739.1
(3)
P 		930
C 1058.6
(-1.4)
P 		1093.6
(-1.2)
P 		886.5
(-2.5)
P 		816.4
(-3)
P 		1557.1
(1.8)
P 		1750
(3)
P 		934
avr 1109.7
(-1.2) 		1079.6
(-1.4) 		810.3
(-3) 		951.9
(-2.1) 		1508.4
(1.2) 		1806.5
(3) 		996
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 581.9
(3)
P 		196.3
(-3)
P 		285
(-1.6)
P 		205.8
(-2.9)
P 		386
B 529.1
(3)
P 		248.4
(-2.6)
P 		226.6
(-3)
P 		328.6
(-1)
P 		303
C 502.1
(3)
P 		276.2
(-1)
P 		387.9
(1)
P 		163.7
(-3)
P 		338
avr 537.7
(3) 		240.3
(-2.9) 		299.8
(-1.7) 		232.7
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 234.7
(-1.7)
P 		367.6
(0.5)
P 		160.2
(-3)
P 		213
(-2.1)
P 		511.8
(3)
P 		470
(2.3)
P 		352
B 346.9
(-1)
P 		370
(-0.7)
P 		196.4
(-3)
P 		317.7
(-1.4)
P 		516.8
(1.3)
P 		648.5
(3)
P 		452
C 392.4
(0.2)
P 		333.7
(-0.6)
P 		225.6
(-2.1)
P 		164.2
(-3)
P 		503.9
(1.8)
P 		585.8
(3)
P 		422
avr 324.7
(-0.9) 		357.1
(-0.4) 		194.1
(-3) 		231.6
(-2.4) 		510.8
(2.1) 		568.1
(3) 		374
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20082
Sequence Type Exemplar sequence
Representative Public ID CEK016F9R NCBI
Target Description CEK016F9R_rc /REP_DB=TREMBL Accession /GB=D27656 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058808 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) (pqn-64) mRNA, complete cds. 11/11 None
T12F5.5a ENSEMBL cdna:known chromosome:CEL140:I:3732882:3740481:-1 gene:T12F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171942 2 1 NM_058808 174701_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:178460-178943(+) 95.62 95.62
chrI:3732891-3733370(-) 100.0 100.0
Public Domain and Genome References
Ensembl T12F5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68905 Prion-like-(q/n-rich)-domain-bearing protein protein 64, isoform a [Caenorhabditis elegans] ref|NP_491209.3| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) [Caenorhabditis elegans] 0.0
blast AAP68906 Prion-like-(q/n-rich)-domain-bearing protein protein 64, isoform b [Caenorhabditis elegans] ref|NP_871824.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-64) [Caenorhabditis elegans] 0.0
blast T32761 hypothetical protein T12F5.5 - Caenorhabditis elegans 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR006630 EMBL-EBI RNA-binding protein Lupus Lal 6.6E-32
Sequence
Target Sequence 
>C. ELEGANS:174701_AT
atatcgaacacctcattgtctgtcctatctcttgatccgtgtagtatttcaacttttctg
ttctcggtcattttcccagcaacacacaaaaaaatcaaatcatcaccaattttcacagcc
tccgaaactgctttactcgtagattgtttgttttttccgtccccccatttttcacttgtt
tcctgtttaatatatattttcccctttcgattattgcgttgccaaaccgaacgtgcttta
ccgcatttcaattgtatttttttccgtttttcaaaaacccccctaatcattcccccacca
ccacaaaaaccatttctcgggactcccgcatttttacaatttctggtatctgggaccttt
ttggagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCGAACACCTCATTGTCTGTCC 253 21 23 Antisense
GTCCTATCTCTTGATCCGTGTAGTA 340 477 44 Antisense
AAATCATCACCAATTTTCACAGCCT 706 117 119 Antisense
GCCTCCGAAACTGCTTTACTCGTAG 494 261 140 Antisense
TTTTCACTTGTTTCCTGTTTAATAT 116 677 191 Antisense
TTCCCCTTTCGATTATTGCGTTGCC 484 695 221 Antisense
TTGCGTTGCCAAACCGAACGTGCTT 386 695 236 Antisense
GAACGTGCTTTACCGCATTTCAATT 542 347 251 Antisense
CACCACCACAAAAACCATTTCTCGG 176 199 318 Antisense
ACTCCCGCATTTTTACAATTTCTGG 611 97 344 Antisense
GGTATCTGGGACCTTTTTGGAGAGT 89 505 367 Antisense
Sequence Source Affymetrix Proprietary Database