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[174700_at]

Description CEK045B7R_rc /REP_DB=TREMBL Accession /GB=D34381 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk45b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 02      6grp_total > 28      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1257
1 2 3 4 range
A 1965.2
(0.1)
P 		2487.5
(3)
P 		2469.9
(2.9)
P 		1392.3
(-3)
P 		1095
B 1995.6
(-0.7)
P 		2222.3
(0.6)
P 		2649.1
(3)
P 		1602
(-3)
P 		1047
C 1778.5
(-3)
P 		2548.4
(3)
P 		2530.6
(2.9)
P 		1847.3
(-2.5)
P 		770
avr 1913.1
(-1.1) 		2419.4
(2.2) 		2549.9
(3) 		1613.9
(-3) 		936

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2160
1 2 3 4 5 6 range
A 3302.6
(3)
P 		2631.8
(1)
P 		1663.6
(-1.9)
P 		1307
(-3)
P 		2646.7
(1)
P 		2158
(-0.4)
P 		1996
B 2902.6
(3)
P 		2734.2
(2.2)
P 		1564
(-3)
P 		2073.4
(-0.7)
P 		1865.6
(-1.6)
P 		2128.6
(-0.5)
P 		1339
C 2696.4
(2.8)
P 		2754.6
(3)
P 		2179.7
(0.9)
P 		1142.3
(-3)
P 		2081.4
(0.5)
P 		1836.9
(-0.4)
P 		1612
avr 2967.2
(3) 		2706.9
(1.9) 		1802.4
(-1.8) 		1507.6
(-3) 		2197.9
(-0.2) 		2041.2
(-0.8) 		1460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 678
1 2 3 4 range
A 715.5
(3)
P 		540
(0.9)
P 		645.7
(2.2)
P 		203.8
(-3)
P 		512
B 636.4
(3)
P 		548.9
(1.2)
P 		613.9
(2.5)
P 		341.4
(-3)
P 		295
C 588.7
(-0.1)
P 		732.7
(1.4)
P 		882
(3)
P 		311.5
(-3)
P 		571
avr 646.9
(2.1) 		607.2
(1.5) 		713.9
(3) 		285.6
(-3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 608.8
(-0.2)
P 		936
(3)
P 		362.3
(-2.7)
P 		331.5
(-3)
P 		798.7
(1.6)
P 		525.4
(-1.1)
P 		605
B 1010
(3)
P 		910.1
(2)
P 		379.8
(-3)
P 		549.2
(-1.4)
P 		758
(0.6)
P 		793.7
(0.9)
P 		630
C 999.4
(3)
P 		840.5
(1.8)
P 		554.8
(-0.5)
P 		229.7
(-3)
P 		673.5
(0.5)
P 		614.9
(0)
P 		770
avr 872.7
(2.7) 		895.5
(3) 		432.3
(-2.3) 		370.1
(-3) 		743.4
(1.3) 		644.7
(0.1) 		525
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21743
Sequence Type Exemplar sequence
Representative Public ID CEK045B7R NCBI
Target Description CEK045B7R_rc /REP_DB=TREMBL Accession /GB=D34381 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk45b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073174(11), NM_001028873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073174 NCBI Caenorhabditis elegans K08H10.2a (K08H10.2) mRNA, complete cds. 11/11 None
NM_001028873 NCBI Caenorhabditis elegans K08H10.2b (K08H10.2) mRNA, complete cds. 11/11 None
K08H10.2a ENSEMBL cdna:known chromosome:CEL140:V:10025080:10030737:1 gene:K08H10.2 11/11 A 
K08H10.2b ENSEMBL cdna:known chromosome:CEL140:V:10026243:10030718:1 gene:K08H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10030372-10030705(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08H10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98279 Hypothetical protein K08H10.2a [Caenorhabditis elegans] emb|CAB05548.2| Hypothetical protein K08H10.2a [Caenorhabditis elegans] ref|NP_505575.2| K08H10.2a [Caenorhabditis elegans] 0.0
blast CAA98278 Hypothetical protein K08H10.2b [Caenorhabditis elegans] emb|CAI46598.1| Hypothetical protein K08H10.2b [Caenorhabditis elegans] ref|NP_001024044.1| K08H10.2b [Caenorhabditis elegans] 0.0
blast CAE61080 Hypothetical protein CBG04830 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Sequence
Target Sequence 
>C. ELEGANS:174700_AT
ttctttttcatccccaagatctggtatataaaacagtaattttatcgctaccctctgcat
cccctctactactgcttcgctaaattgttgttgaattgtttcaatctttttggattgccc
cgccaactatatttactatcagtttcctctgttaattctttgttgtagaaagaaacaatc
tcccttccccattcccatctgacaaataatatttaccactaccaatattgtgccttttat
aggtttcttttgcttgctttgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTTCATCCCCAAGATCTGGT 259 691 15 Antisense
CAGTAATTTTATCGCTACCCTCTGC 313 207 48 Antisense
CCTCTACTACTGCTTCGCTAAATTG 403 267 77 Antisense
CCCCGCCAACTATATTTACTATCAG 87 261 132 Antisense
ATTTACTATCAGTTTCCTCTGTTAA 528 15 145 Antisense
GTTTCCTCTGTTAATTCTTTGTTGT 406 451 156 Antisense
TGTAGAAAGAAACAATCTCCCTTCC 330 553 178 Antisense
CCCCATTCCCATCTGACAAATAATA 550 261 201 Antisense
TTACCACTACCAATATTGTGCCTTT 227 681 227 Antisense
TATTGTGCCTTTTATAGGTTTCTTT 69 667 240 Antisense
TAGGTTTCTTTTGCTTGCTTTGTTT 423 653 254 Antisense
Sequence Source Affymetrix Proprietary Database