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[174699_at]

Description CEK053B9R_rc /REP_DB=TREMBL Accession /GB=D64485 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53b9 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 40
(1.6)
A 		51.4
(3)
A 		4.2
(-3)
A 		7.1
(-2.6)
A 		47
B 4
(-2.7)
A 		2.3
(-3)
A 		4
(-2.7)
A 		38.6
(3)
A 		36
C 25.2
(-1.7)
A 		6.5
(-3)
A 		8.1
(-2.9)
A 		94.6
(3)
A 		88
avr 23.1
(-0.4) 		20.1
(-0.9) 		5.4
(-3) 		46.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3
(-2.9)
A 		54.2
(3)
A 		45.1
(2)
A 		1.7
(-3)
A 		42.2
(1.6)
A 		6.1
(-2.5)
A 		53
B 5.6
(2)
A 		4.5
(0.5)
A 		6.3
(3)
A 		3.7
(-0.6)
A 		2
(-3)
A 		3.7
(-0.6)
A 		4
C 5.6
(-2.4)
A 		23.1
(1.5)
A 		4.5
(-2.6)
A 		2.8
(-3)
A 		29.7
(3)
A 		3.4
(-2.9)
A 		27
avr 4.7
(-2.5) 		27.3
(3) 		18.6
(0.9) 		2.7
(-3) 		24.6
(2.3) 		4.4
(-2.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.6
(3)
A 		11.1
(1.5)
A 		1.1
(-3)
A 		1
(-3)
A 		14
B 1.3
(-2.4)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		8.2
(3)
A 		8
C 8.4
(-0.2)
A 		1.9
(-3)
A 		2.8
(-2.6)
A 		16
(3)
A 		14
avr 8.1
(2.7) 		4.5
(-0.4) 		1.6
(-3) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.5
(-3)
A 		19.3
(3)
A 		9.8
(-0)
A 		0.4
(-3)
A 		12.7
(0.9)
A 		1.5
(-2.7)
A 		19
B 2
(3)
A 		1.5
(0.5)
A 		1.5
(0.5)
A 		1
(-2)
A 		0.8
(-3)
A 		1.4
(-0)
A 		1
C 2.1
(-2)
A 		7
(1.3)
A 		1.1
(-2.7)
A 		0.6
(-3)
A 		9.6
(3)
A 		1.1
(-2.7)
A 		9
avr 1.5
(-2.4) 		9.3
(3) 		4.1
(-0.6) 		0.7
(-3) 		7.7
(1.9) 		1.3
(-2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20125
Sequence Type Exemplar sequence
Representative Public ID CEK053B9R NCBI
Target Description CEK053B9R_rc /REP_DB=TREMBL Accession /GB=D64485 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK053B9R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK053B9R CEK053B9R_rc /REP_DB=TREMBL Accession /GB=D64485 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk53b9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2657411-2657690(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174699_AT
atgttgtttctcatgacttttgatcatacattgataagaacgtactcgtgaattcagggt
ttggaaaacacccgtgttttgatctactaggattttccagtgcgcttcgatttctggaaa
aaaatttaaactcggataaccataaaaattaggggaaatatttgaaattgtcaaagtaga
tcatttctgtgccaggtgtgctcttttaatagatgaggttttggttcatctattttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGTTTCTCATGACTTTTGATC 476 47 18 Antisense
GTTTCTCATGACTTTTGATCATACA 262 451 23 Antisense
GAACGTACTCGTGAATTCAGGGTTT 676 347 55 Antisense
AACACCCGTGTTTTGATCTACTAGG 70 135 84 Antisense
GATCTACTAGGATTTTCCAGTGCGC 543 419 98 Antisense
TTTTCCAGTGCGCTTCGATTTCTGG 24 677 110 Antisense
CAGTGCGCTTCGATTTCTGGAAAAA 494 207 115 Antisense
AAAGTAGATCATTTCTGTGCCAGGT 574 121 190 Antisense
GATCATTTCTGTGCCAGGTGTGCTC 242 421 196 Antisense
GTGCCAGGTGTGCTCTTTTAATAGA 59 479 206 Antisense
GAGGTTTTGGTTCATCTATTTTAGA 664 399 232 Antisense
Sequence Source Affymetrix Proprietary Database