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[174698_at] beta'-coat protein like

Description CEK039C1R_rc /REP_DB=TREMBL Accession /GB=D33984 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 10      6grp_total > 18      4grp_total > 60      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 1694.3
(1.9)
P 		1624.6
(1)
P 		1781.7
(3)
P 		1303.3
(-3)
P 		478
B 1621
(3)
P 		1485.4
(-0.4)
P 		1442.8
(-1.5)
P 		1381.6
(-3)
P 		239
C 1522.7
(-0.5)
P 		1676.6
(1.4)
P 		1812.6
(3)
P 		1314.6
(-3)
P 		498
avr 1612.7
(1.8) 		1595.5
(1.6) 		1679
(3) 		1333.2
(-3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2119
1 2 3 4 5 6 range
A 1757.6
(3)
P 		1447.6
(-0.3)
P 		1196.7
(-3)
P 		1250.4
(-2.4)
P 		1317.6
(-1.7)
P 		1527.4
(0.5)
P 		561
B 1655.7
(3)
P 		1399.7
(1.7)
P 		481.8
(-3)
P 		1337.4
(1.4)
P 		1004
(-0.3)
P 		1105.4
(0.2)
P 		1174
C 2600.8
(3)
P 		1249.4
(-2.1)
P 		1522.9
(-1.1)
P 		1018.7
(-3)
P 		1477.8
(-1.3)
P 		1023.9
(-3)
P 		1582
avr 2004.7
(3) 		1365.6
(-1.1) 		1067.1
(-3) 		1202.2
(-2.1) 		1266.5
(-1.7) 		1218.9
(-2) 		938
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 616.9
(3)
P 		352.6
(-0.7)
P 		465.8
(0.9)
P 		190.8
(-3)
P 		426
B 516.9
(3)
P 		366.9
(-1)
P 		334.3
(-1.9)
P 		294.4
(-3)
P 		223
C 504.1
(1.1)
P 		482
(0.8)
P 		631.7
(3)
P 		221.7
(-3)
P 		410
avr 546
(3) 		400.5
(0.2) 		477.3
(1.7) 		235.6
(-3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 847
1 2 3 4 5 6 range
A 324
(-1.5)
P 		514.8
(3)
P 		260.6
(-3)
P 		317.1
(-1.7)
P 		397.6
(0.2)
P 		371.9
(-0.4)
P 		254
B 576.1
(3)
P 		465.9
(1.6)
P 		117
(-3)
P 		354.2
(0.1)
P 		407.9
(0.8)
P 		412.2
(0.9)
P 		459
C 964
(3)
P 		381.2
(-1.6)
P 		387.6
(-1.6)
P 		204.9
(-3)
P 		478.2
(-0.8)
P 		342.8
(-1.9)
P 		759
avr 621.4
(3) 		454
(0.3) 		255.1
(-3) 		292.1
(-2.4) 		427.9
(-0.2) 		375.6
(-1) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21299
Sequence Type Exemplar sequence
Representative Public ID CEK039C1R NCBI
Target Description CEK039C1R_rc /REP_DB=TREMBL Accession /GB=D33984 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069270 NCBI Caenorhabditis elegans F38E11.5 (F38E11.5) mRNA, complete cds. 11/11 None
F38E11.5 ENSEMBL cdna:known chromosome:CEL140:IV:9459708:9463999:1 gene:F38E11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9463638-9463961(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta'-coat protein like
Ensembl F38E11.5
Entrez Gene 177779 Entrez gene
SwissProt Q20168 EMBL-EBI
WormBase CE18673 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258331_AT coatomer protein complex, subunit beta 2 (beta prime), putative at
CANINE:1587025_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFA.18764.1.S1_S_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFA.20115.1.S1_S_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFA.3255.1.A1_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFA.3255.1.A1_S_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFAAFFX.12255.1.S1_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
CANINE_2:CFAAFFX.12255.1.S1_S_AT similar to coatomer protein complex, subunit beta 2 (beta prime) cfa
DROSOPHILA_2:1635871_AT -coatomer protein dm
DROSGENOME1:152667_AT -coatomer protein dm
CHICKEN:GGA.8560.1.S1_AT similar to beta prime cop gga
HG-U133A:201098_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133_PLUS_2:201098_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133A_2:201098_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HG-FOCUS:201098_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HUGENEFL:X70476_AT coatomer protein complex, subunit beta 2 (beta prime) hs
U133_X3P:G4758031_3P_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U95AV2:36677_AT coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U95E:71604_F_AT coatomer protein complex, subunit beta 2 (beta prime) hs
U133_X3P:4863505C_3P_S_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133A_2:213500_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133_PLUS_2:213500_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133A:213500_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133A_2:31799_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133_PLUS_2:31799_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133A:31799_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U95AV2:31799_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133_PLUS_2:241502_X_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U133B:241502_X_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
HG-U95C:66619_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
U133_X3P:HS.125931.0.A1_3P_AT Coatomer protein complex, subunit beta 2 (beta prime) hs
MOUSE430_2:1456175_A_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MOE430A:1456175_A_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MOUSE430A_2:1456175_A_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MG-U74AV2:93341_R_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MG-U74AV2:93340_F_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MOE430A:1452102_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MOUSE430A_2:1452102_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MOUSE430_2:1452102_AT coatomer protein complex, subunit beta 2 (beta prime) mm
MU19KSUBC:TC40614_AT Coatomer protein complex, subunit beta 2 (beta prime), mRNA (cDNA clone MGC:6378 IMAGE:3499585) mm
MU19KSUBC:TC40614_G_AT Coatomer protein complex, subunit beta 2 (beta prime), mRNA (cDNA clone MGC:6378 IMAGE:3499585) mm
MU19KSUBC:TC40615_AT Coatomer protein complex, subunit beta 2 (beta prime), mRNA (cDNA clone MGC:6378 IMAGE:3499585) mm
YEAST_2:1779632_AT Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92776 Hypothetical protein F38E11.5 [Caenorhabditis elegans] ref|NP_501671.1| F38E11.5 [Caenorhabditis elegans] pir||T21970 hypothetical protein F38E11.5 - Caenorhabditis elegans 0.0
blast Q20168 Probable coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) 0.0
blast CAE74018 Hypothetical protein CBG21666 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006692 EMBL-EBI Coatomer WD associated region 1.0E-126
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.5E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.8E-13
Sequence
Target Sequence 
>C. ELEGANS:174698_AT
ttttatttctactggtcactcctgtcgtaagctccctttgccaactatccacccaattca
tccctccccgttttcatatttctgccttcaaaatcacataacttattgaatttttatgtt
tatcgccctttctgatttataagtaaacactaagttatttccagcttttttgtgcggtgt
tttttgtattctaggggttttcttcgaagttttgttctatggctttttccacttctacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTATTTCTACTGGTCACTCCTGT 370 673 26 Antisense
TTCTGCCTTCAAAATCACATAACTT 119 695 105 Antisense
TGAATTTTTATGTTTATCGCCCTTT 208 577 132 Antisense
TATGTTTATCGCCCTTTCTGATTTA 308 655 140 Antisense
TATCGCCCTTTCTGATTTATAAGTA 355 659 146 Antisense
GTAAACACTAAGTTATTTCCAGCTT 489 461 168 Antisense
ATTTCCAGCTTTTTTGTGCGGTGTT 208 17 182 Antisense
GTGCGGTGTTTTTTGTATTCTAGGG 293 479 197 Antisense
TGTATTCTAGGGGTTTTCTTCGAAG 677 557 210 Antisense
TCTTCGAAGTTTTGTTCTATGGCTT 582 615 226 Antisense
TCTATGGCTTTTTCCACTTCTACTA 244 615 241 Antisense
Sequence Source Affymetrix Proprietary Database