[Home] | [Total List]

[174697_at]

Description CEK063E7R_rc /REP_DB=TREMBL Accession /GB=D71200 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 173.3
(-3)
P 		271.9
(3)
P 		187.6
(-2.1)
P 		194.6
(-1.7)
P 		99
B 190.4
(-2)
P 		296
(3)
P 		217.8
(-0.7)
P 		168.6
(-3)
P 		127
C 250.1
(2.2)
P 		267.4
(3)
P 		266
(2.9)
P 		144.7
(-3)
P 		123
avr 204.6
(-1.1) 		278.4
(3) 		223.8
(-0) 		169.3
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 542.4
(3)
P 		251.2
(-2.3)
P 		213.6
(-3)
P 		253.9
(-2.3)
P 		251.5
(-2.3)
P 		360.5
(-0.3)
P 		329
B 450.1
(3)
P 		306.8
(-0.8)
P 		316.7
(-0.5)
P 		354.9
(0.5)
P 		221.4
(-3)
P 		442.5
(2.8)
P 		229
C 414
(3)
P 		280.5
(-0.2)
P 		236.4
(-1.2)
P 		298.4
(0.3)
P 		160.3
(-3)
P 		412.6
(3)
P 		254
avr 468.8
(3) 		279.5
(-1.4) 		255.6
(-2) 		302.4
(-0.9) 		211.1
(-3) 		405.2
(1.5) 		258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 63.1
(3)
P 		59
(2.3)
P 		49
(0.6)
P 		28.5
(-3)
P 		35
B 60.7
(1)
P 		73.1
(3)
P 		50.5
(-0.6)
P 		35.9
(-3)
P 		37
C 82.8
(2.1)
P 		76.9
(1.6)
P 		92.7
(3)
P 		24.4
(-3)
P 		68
avr 68.9
(2.9) 		69.7
(3) 		64.1
(2.2) 		29.6
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 100
(3)
P 		89.3
(1.8)
P 		46.5
(-3)
P 		64.4
(-1)
P 		75.9
(0.3)
P 		87.8
(1.6)
P 		54
B 156.6
(2.4)
P 		102.1
(-1.3)
P 		76.9
(-3)
P 		94
(-1.8)
P 		90
(-2.1)
P 		165
(3)
P 		88
C 153.4
(3)
P 		85.6
(-1)
P 		60.2
(-2.5)
P 		60
(-2.5)
P 		51.9
(-3)
P 		138.1
(2.1)
P 		102
avr 136.7
(3) 		92.3
(-0.5) 		61.2
(-3) 		72.8
(-2.1) 		72.6
(-2.1) 		130.3
(2.5) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20876
Sequence Type Exemplar sequence
Representative Public ID CEK063E7R NCBI
Target Description CEK063E7R_rc /REP_DB=TREMBL Accession /GB=D71200 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063187 NCBI Caenorhabditis elegans F35D2.3 (F35D2.3) mRNA, complete cds. 11/11 None
F35D2.3 ENSEMBL cdna:known chromosome:CEL140:II:7570527:7572354:1 gene:F35D2.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7571993-7572335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D2.3
Entrez Gene 174229 Entrez gene
SwissProt Q20043 EMBL-EBI
WormBase CE31804 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68325 Hypothetical protein F35D2.3 [Caenorhabditis elegans] ref|NP_495588.2| F35D2.3 [Caenorhabditis elegans] 1.0E-146
blast CAE67491 Hypothetical protein CBG12999 [Caenorhabditis briggsae] 1.0E-137
blast CAG01316 unnamed protein product [Tetraodon nigroviridis] 4.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495588.2 1 211-233
F35D2.3 1 211-233
Sequence
Target Sequence 
>C. ELEGANS:174697_AT
cggtctcacaaagtcctctaatgtctattctggtctgaaccaacatcttagttctttagc
aacatttctttcttactttctaactttaagcgtatttttaacctatgtacatatcccaat
taatcaatgcatttattttgttcatcaacaattaacctcatcctcttctcaatttcttcc
tcttcactttctactggtaacttcttcactctcaacgagtgttttctctgccaattcttc
tttcattcgtatttatgttttcgcatccttttcataaataggcacttatttcattgtagt
aact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTCTCACAAAGTCCTCTAATGTC 700 243 14 Antisense
GTCCTCTAATGTCTATTCTGGTCTG 670 475 26 Antisense
ACCAACATCTTAGTTCTTTAGCAAC 440 75 52 Antisense
GCAACATTTCTTTCTTACTTTCTAA 386 317 72 Antisense
CCTATGTACATATCCCAATTAATCA 235 267 115 Antisense
TCATCAACAATTAACCTCATCCTCT 252 621 155 Antisense
TTTCTACTGGTAACTTCTTCACTCT 654 671 201 Antisense
CAACGAGTGTTTTCTCTGCCAATTC 4 189 226 Antisense
GCCAATTCTTCTTTCATTCGTATTT 437 277 243 Antisense
ATGTTTTCGCATCCTTTTCATAAAT 322 47 268 Antisense
AGGCACTTATTTCATTGTAGTAACT 2 55 293 Antisense
Sequence Source Affymetrix Proprietary Database